Prupe.3G243800_v2.0.a1

S-adenosylmethionine decarboxylase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
23632269 .. 23632518
250 bp
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UTR
Exon/CDS
Intron
Prupe.3G243800.1

Sequence Viewer

Length: 156 bp
ATGGAGTCGAAGGGTGGCAAAAAGAAGTCTAGTAGTAGTAAGTCATTATTTTACGAAGCTCCCCTCGGTTACAGCATTGAAGACGTCAGGCCTCACGGTGGAATCAAGAAATTCAGATCAGCTGCTTACTCTAACTGCGTCCGCAAGCCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

5.6

Weight (kDa)

9.93

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
AciI CCGC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 80
AluBI AGCT 2 cut(s) 59, 122
AluI AGCT 2 cut(s) 59, 122
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 109
BfaI CTAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 149
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 146
CseI GACGC 1 cut(s) 127
CviJI RGCY 4 cut(s) 59, 91, 122, 148
CviKI_1 RGCY 4 cut(s) 59, 91, 122, 148
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eco147I AGGCCT 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 30
FspEI CC 8 cut(s) 51, 73, 75, 76, 77, 81, 84, 105
GluI GCNGC 1 cut(s) 123
HaeIII GGCC 1 cut(s) 91
HgaI GACGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 84
HinfI GANTC 2 cut(s) 5, 102
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 106, 153
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 1 cut(s) 73
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 92
MluCI AATT 1 cut(s) 110
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 74, 102
MspA1I CMGCKG 1 cut(s) 122
NdeII GATC 1 cut(s) 116
PceI AGGCCT 1 cut(s) 91
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 122
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 116
SchI GAGTC 1 cut(s) 14
SetI ASST 3 cut(s) 61, 87, 124
SgeI CNNG 5 cut(s) 42, 77, 100, 107, 118
Sse9I AATT 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 91
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 30
StuI AGGCCT 1 cut(s) 91
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 110
TfiI GAWTC 1 cut(s) 102
TseI GCWGC 1 cut(s) 122
XapI RAATTY 1 cut(s) 110
XspI CTAG 1 cut(s) 30
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.