Rmu_ssc0000432.1_g000024

S-adenosyl-l-methionine decarboxylase leader peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0004538
Physical Location & Seq
Reverse (-)
97638 .. 99965
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000432.1_g000024.1.cds

Sequence Viewer

Length: 351 bp
atgtgggccagtgccatgcaagacgagcgtggaatggatcgagaagaaggcaaaatgacaaaaaaggccagctcacagcatcagactgggtttccattatcttggtcgccgtcccaaaatttcgaatctttaggttttgatttggaggtttcaaaagggggtcttcgaaggaggtataaactgaatgagctaatggagtcaaagggtgggaaaaagaagtctagcagtagtaattcctcattattctacgaagctcccctaggatacagcattgaagacgtcagacctcacggtggaatcaagaaattcagatcagctgcatactctaactgcgttcgaaagccatcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AdoMetDC_leader

Protein Analysis

116

Amino Acids

13.02

Weight (kDa)

9.68

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 2 cut(s) 118, 305
AcyI GRCGYC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 153, 275
AluBI AGCT 4 cut(s) 72, 190, 254, 317
AluI AGCT 4 cut(s) 72, 190, 254, 317
AlwI GGATC 1 cut(s) 45
AoxI GGCC 2 cut(s) 6, 66
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 2 cut(s) 118, 305
AspA2I CCTAGG 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 6
AsuII TTCGAA 3 cut(s) 123, 166, 337
AvrII CCTAGG 1 cut(s) 259
BbsI GAAGAC 2 cut(s) 155, 282
BbvI GCAGC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 94
BciVI GTATCC 1 cut(s) 257
BfaI CTAG 2 cut(s) 222, 260
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 1 cut(s) 318
BlnI CCTAGG 1 cut(s) 259
BlsI GCNGC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 2 cut(s) 155, 282
Bpu14I TTCGAA 3 cut(s) 123, 166, 337
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 9, 91
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 9, 91
BseXI GCAGC 1 cut(s) 304
BshFI GGCC 2 cut(s) 8, 68
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 2 cut(s) 8, 68
Bsp119I TTCGAA 3 cut(s) 123, 166, 337
Bsp143I GATC 2 cut(s) 37, 311
BspANI GGCC 2 cut(s) 8, 68
BspPI GGATC 1 cut(s) 45
BspT104I TTCGAA 3 cut(s) 123, 166, 337
BsrI ACTGG 2 cut(s) 9, 91
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 37, 311
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 279
BstBI TTCGAA 3 cut(s) 123, 166, 337
BstC8I GCNNGC 1 cut(s) 70
BstF5I GGATG 1 cut(s) 344
BstKTI GATC 2 cut(s) 40, 314
BstMBI GATC 2 cut(s) 37, 311
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 2 cut(s) 155, 282
BstXI CCANNNNNNTGG 1 cut(s) 102
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 8, 68
BtsCI GGATG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 1 cut(s) 16
CviJI RGCY 7 cut(s) 8, 68, 72, 190, 254, 317, 343
CviKI_1 RGCY 7 cut(s) 8, 68, 72, 190, 254, 317, 343
DpnI GATC 2 cut(s) 39, 313
DpnII GATC 2 cut(s) 37, 311
Eco130I CCWWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 19
FaiI YATR 3 cut(s) 17, 177, 322
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 1 cut(s) 97
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 2 cut(s) 222, 260
GluI GCNGC 1 cut(s) 318
HaeIII GGCC 2 cut(s) 8, 68
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 1 cut(s) 19
HinfI GANTC 3 cut(s) 125, 197, 297
Hpy188I TCNGA 3 cut(s) 84, 284, 311
Hpy188III TCNNGA 3 cut(s) 41, 301, 348
HpyAV CCTTC 2 cut(s) 41, 162
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 19, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 1 cut(s) 19
Kzo9I GATC 2 cut(s) 37, 311
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 3 cut(s) 22, 72, 82
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 88
MaeI CTAG 2 cut(s) 222, 260
MaeII ACGT 1 cut(s) 279
MalI GATC 2 cut(s) 39, 313
MboI GATC 2 cut(s) 37, 311
MboII GAAGA 3 cut(s) 56, 155, 287
MluCI AATT 3 cut(s) 118, 232, 305
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 4 cut(s) 139, 165, 247, 297
MspA1I CMGCKG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 2 cut(s) 37, 311
NlaIII CATG 1 cut(s) 19
NspV TTCGAA 3 cut(s) 123, 166, 337
PfeI GAWTC 2 cut(s) 125, 297
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 317
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 37, 311
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 206
SetI ASST 9 cut(s) 74, 136, 150, 176, 192, 256, 282, 289, 319
SfaNI GCATC 1 cut(s) 88
SfuI TTCGAA 3 cut(s) 123, 166, 337
Sse9I AATT 3 cut(s) 118, 232, 305
SspMI CTAG 2 cut(s) 222, 260
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 282
TaqI TCGA 4 cut(s) 40, 123, 166, 337
TasI AATT 3 cut(s) 118, 232, 305
TfiI GAWTC 2 cut(s) 125, 297
TscAI CASTG 1 cut(s) 16
TseI GCWGC 1 cut(s) 317
TspRI CASTG 1 cut(s) 16
XapI RAATTY 2 cut(s) 118, 305
XmaJI CCTAGG 1 cut(s) 259
XspI CTAG 2 cut(s) 222, 260
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.