Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004538

Physical Location & Seq

Genomic Coordinates Reverse (-)

68800424 .. 68805455

Gene Structure 5032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG494100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGCACATGGTGGAGTTATACCGTCCTTATCTTGTATTCAAGGGCATGTACGTCGACGATAACTTAAATTGGCTTCAATCTCTTCTCTTCGGAACCGAACTAGCCTTCGAGAGAAATGACTTCTCCTTCGCTCCGATCTGCAGTCTTCGTCCCACAGTCCCACTCCCAGCCAGTGGCGGAACTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

62

Amino Acids

7.07

Weight (kDa)

4.95

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FIGL1_N	PF24347	17 - 50	1.9e-08	FIGL1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28640
malus_domestica	MD09G1079900.v1.1 MD17G1070400.v1.1
prunus_persica	Prupe.1G299600_v2.0.a1 Prupe.3G243800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350481 RchiOBHm_Chr2g0163951 RchiOBHm_Chr4g0408541 RchiOBHm_Chr4g0436751 RchiOBHm_Chr7g0221071
rosa_laevigata	RLG00000021428
rosa_multiflora	Rmu_sc0009359.1_g000001 Rmu_ssc0000432.1_g000024
rosa_roxburghii	Rroxscaffold_2G00086900 Rroxscaffold_5G00358420
rosa_rugosa	Rorug02G0505100 Rorug03G0283900 Rorug04G0295800
rosa_samantha	Rh2BG373000 Rh2BG584500 Rh2CG309800 Rh2CG555400 Rh2DG349200 Rh4AG350200 Rh4BG359000 Rh4CG373400 Rh4DG353100 Rh5AG084500 Rh5CG494100 Rh6BG085300
rosa_wichuraiana	Rw2G047450 Rw4G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	10
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	40, 77
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	171
BseYI	CCCAGC	1 cut(s)	166
BslFI	GGGAC	2 cut(s)	135, 143
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	2 cut(s)	135, 143
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	135
Bst4CI	ACNGT	3 cut(s)	23, 157, 184
Bst6I	CTCTTC	2 cut(s)	87, 92
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	2 cut(s)	7, 46
CviJI	RGCY	3 cut(s)	73, 104, 170
CviKI_1	RGCY	3 cut(s)	73, 104, 170
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
DraIII	CACNNNGTG	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	87, 92
EarI	CTCTTC	2 cut(s)	87, 92
FaeI	CATG	2 cut(s)	10, 49
FaiI	YATR	3 cut(s)	8, 19, 47
FaqI	GGGAC	2 cut(s)	135, 143
FatI	CATG	2 cut(s)	6, 45
FblI	GTMKAC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	101
GsaI	CCCAGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	10, 49
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	92, 135
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	2 cut(s)	56, 59
HpyAV	CCTTC	2 cut(s)	115, 136
HpyCH4III	ACNGT	3 cut(s)	23, 157, 184
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	4, 141
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	10, 49
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	2 cut(s)	180, 184
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	51
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	3 cut(s)	74, 79, 137
MluCI	AATT	1 cut(s)	67
MseI	TTAA	1 cut(s)	65
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	2 cut(s)	10, 49
NlaIV	GGNNCC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	135
SetI	ASST	1 cut(s)	54
SfcI	CTRYAG	1 cut(s)	139
SgeI	CNNG	8 cut(s)	19, 44, 52, 58, 113, 121, 179, 183
SgrDI	CGTCGACG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	101
TaaI	ACNGT	3 cut(s)	23, 157, 184
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	54, 108
TasI	AATT	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	178
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	173
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.