RchiOBHm_Chr4g0408541

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004538
Physical Location & Seq
Reverse (-)
31327041 .. 31331079
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37963

Sequence Viewer

Length: 372 bp
ATGCAAGTCAACGATAACCTAAACCGGCTTAAATCTCTTCTCTTCGGAACCGAACTCGCCGCCGAGAGAAAAGACTTCTCCTCCGCTCAGATCTGCAGTCTTCGTTCCACAGTCCCACTCGATCTCAGCTCGACCATGCTTTCGTCACCCTTATTCTCCGCAAAGCCGTCTCCAAGCTCGGTGAGGCTCGTTGTCCGCGCATTTCTGATTCCTATTGGTGCGACTGAATGTCAGCACAGGAGACTCGAGTCCCCGACATCTTCCCCCCTCATGGCATCAGCAGCTTCAATTAACTTGAGTGTCTCGGTGATAGTCACCATTTCAAAAAAACAGCAGTCCACACCACCTCTTGGTGACCCAACCCGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

123

Amino Acids

13.25

Weight (kDa)

10.17

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FIGL1_N PF24347 2 - 35 4.8e-11 FIGL1 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 350
AccBSI CCGCTC 1 cut(s) 86
AccII CGCG 1 cut(s) 198
AciI CCGC 4 cut(s) 60, 84, 159, 196
AfiI CCNNNNNNNGG 2 cut(s) 271, 350
AgsI TTSAA 2 cut(s) 288, 324
AhdI GACNNNNNGTC 1 cut(s) 228
AluBI AGCT 3 cut(s) 129, 177, 284
AluI AGCT 3 cut(s) 129, 177, 284
Alw26I GTCTC 3 cut(s) 174, 235, 307
Ama87I CYCGRG 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AspLEI GCGC 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 5 cut(s) 138, 193, 307, 319, 365
AvaI CYCGRG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 364
BcoDI GTCTC 3 cut(s) 174, 235, 307
BfmI CTRYAG 1 cut(s) 94
BglII AGATCT 1 cut(s) 90
BisI GCNGC 2 cut(s) 60, 282
BlsI GCNGC 2 cut(s) 61, 283
Bme1390I CCNGG 1 cut(s) 364
BmeRI GACNNNNNGTC 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 1 cut(s) 284
BoxI GACNNNNGTC 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 350
Bse118I RCCGGY 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 271, 350
BseMII CTCAG 2 cut(s) 101, 139
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 2 cut(s) 25, 364
BslFI GGGAC 2 cut(s) 98, 235
BslI CCNNNNNNNGG 2 cut(s) 271, 350
BsmAI GTCTC 3 cut(s) 174, 235, 307
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 2 cut(s) 98, 235
BsoBI CYCGRG 1 cut(s) 245
Bsp143I GATC 2 cut(s) 90, 121
BspACI CCGC 4 cut(s) 60, 84, 159, 196
BspCNI CTCAG 2 cut(s) 100, 138
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 24
BssMI GATC 2 cut(s) 90, 121
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 42, 47
BstDEI CTNAG 2 cut(s) 87, 125
BstEII GGTNACC 1 cut(s) 353
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 2 cut(s) 93, 124
BstMAI GTCTC 3 cut(s) 174, 235, 307
BstMBI GATC 2 cut(s) 90, 121
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstPAI GACNNNNGTC 1 cut(s) 247
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 94
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 24
CviAII CATG 2 cut(s) 136, 271
CviJI RGCY 6 cut(s) 28, 129, 166, 177, 187, 284
CviKI_1 RGCY 6 cut(s) 28, 129, 166, 177, 187, 284
DdeI CTNAG 2 cut(s) 87, 125
DpnI GATC 2 cut(s) 92, 123
DpnII GATC 2 cut(s) 90, 121
DriI GACNNNNNGTC 1 cut(s) 228
Eam1104I CTCTTC 2 cut(s) 42, 47
Eam1105I GACNNNNNGTC 1 cut(s) 228
EarI CTCTTC 2 cut(s) 42, 47
Eco88I CYCGRG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 2 cut(s) 139, 274
FaiI YATR 2 cut(s) 137, 272
FaqI GGGAC 2 cut(s) 98, 235
FatI CATG 2 cut(s) 135, 270
Fnu4HI GCNGC 2 cut(s) 60, 282
Fsp4HI GCNGC 2 cut(s) 60, 282
GlaI GCGC 1 cut(s) 199
GluI GCNGC 2 cut(s) 60, 282
HapII CCGG 2 cut(s) 25, 364
HhaI GCGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 139, 274
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 3 cut(s) 208, 243, 248
HpaII CCGG 2 cut(s) 25, 364
HphI GGTGA 5 cut(s) 138, 193, 307, 319, 365
Hpy166II GTNNAC 2 cut(s) 10, 339
Hpy188I TCNGA 3 cut(s) 47, 90, 207
Hpy8I GTNNAC 2 cut(s) 10, 339
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 4, 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 87, 125
Hsp92II CATG 2 cut(s) 139, 274
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 90, 121
LpnPI CCDG 2 cut(s) 38, 223
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 1 cut(s) 284
MaeIII GTNAC 3 cut(s) 144, 313, 353
MalI GATC 2 cut(s) 92, 123
MbiI CCGCTC 1 cut(s) 86
MboI GATC 2 cut(s) 90, 121
MboII GAAGA 4 cut(s) 29, 34, 92, 252
MflI RGATCY 1 cut(s) 90
MluCI AATT 1 cut(s) 288
MlyI GAGTC 2 cut(s) 237, 257
MnlI CCTC 4 cut(s) 91, 177, 278, 357
MseI TTAA 2 cut(s) 30, 291
MspI CCGG 2 cut(s) 25, 364
MspR9I CCNGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 364
NdeII GATC 2 cut(s) 90, 121
NlaIII CATG 2 cut(s) 139, 274
NlaIV GGNNCC 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 3 cut(s) 144, 313, 353
PaeR7I CTCGAG 1 cut(s) 245
PfeI GAWTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 2 cut(s) 61, 283
PleI GAGTC 2 cut(s) 237, 256
PpsI GAGTC 2 cut(s) 237, 256
PshAI GACNNNNGTC 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 49
PspXI VCTCGAGB 1 cut(s) 245
PstI CTGCAG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 90
SaqAI TTAA 2 cut(s) 30, 291
SatI GCNGC 2 cut(s) 60, 282
Sau3AI GATC 2 cut(s) 90, 121
SchI GAGTC 2 cut(s) 237, 257
ScrFI CCNGG 1 cut(s) 364
SetI ASST 5 cut(s) 21, 131, 179, 286, 349
SfaNI GCATC 1 cut(s) 284
SfcI CTRYAG 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 245, 295
SmoI CTYRAG 2 cut(s) 245, 295
Sse9I AATT 1 cut(s) 288
SsiI CCGC 4 cut(s) 60, 84, 159, 196
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 3 cut(s) 120, 131, 246
TasI AATT 1 cut(s) 288
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 2 cut(s) 30, 291
Tru9I TTAA 2 cut(s) 30, 291
TseFI GTSAC 3 cut(s) 144, 313, 353
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 3 cut(s) 144, 313, 353
Van91I CCANNNNNTGG 1 cut(s) 350
XhoI CTCGAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.