Rw2G047450

S-adenosyl-l-methionine decarboxylase leader peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004538
Physical Location & Seq
Forward (+)
74745754 .. 74746352
599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G047450.1

Sequence Viewer

Length: 255 bp
ATGCTGAGTGTGTCTCTTATCCCCCTTATTTGTTTTGGTTTATTGGTGCTAACTCTTTGGTTGATTTGTTTTTACAGGTATAAACTGAATGAGCTAATGGAGTCAAAGGGTGGGAAAAAGAAGTCTAGCAGTAGTAATTCCTCATTATTCTACGAAGCTCCCCTAGGATACAGCATTGAAGACGTCAGACCTCACGGTGGAATCAAGAAATTCAGATCAGCTGCATACTCTAACTGCGTGCGAAAGCCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AdoMetDC_leader

Protein Analysis

84

Amino Acids

9.44

Weight (kDa)

9.58

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AdoMetDC_leader PF08132 33 - 84 6.9e-35 S-adenosyl-l-methionine decarboxylase leader peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 3 cut(s) 94, 158, 221
AluI AGCT 3 cut(s) 94, 158, 221
Alw26I GTCTC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 209
AspA2I CCTAGG 1 cut(s) 163
AvrII CCTAGG 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 208
BciVI GTATCC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 2 cut(s) 126, 164
BfuI GTATCC 1 cut(s) 161
BisI GCNGC 1 cut(s) 222
BlnI CCTAGG 1 cut(s) 163
BlsI GCNGC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 186
BplI GAGNNNNNCTC 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 1 cut(s) 215
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 5
BstF5I GGATG 1 cut(s) 248
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 186
BsuI GTATCC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 239
CviJI RGCY 4 cut(s) 94, 158, 221, 247
CviKI_1 RGCY 4 cut(s) 94, 158, 221, 247
DdeI CTNAG 1 cut(s) 5
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaiI YATR 2 cut(s) 81, 226
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 2 cut(s) 126, 164
GluI GCNGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 183
HinfI GANTC 2 cut(s) 101, 201
Hpy188I TCNGA 2 cut(s) 188, 215
Hpy188III TCNNGA 2 cut(s) 205, 252
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 5
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 183
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 2 cut(s) 126, 164
MaeII ACGT 1 cut(s) 183
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 1 cut(s) 191
MluCI AATT 2 cut(s) 136, 209
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 151, 201
MspA1I CMGCKG 1 cut(s) 221
NdeII GATC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 221
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 215
SchI GAGTC 1 cut(s) 110
SetI ASST 6 cut(s) 80, 96, 160, 186, 193, 223
SgeI CNNG 6 cut(s) 88, 138, 176, 206, 217, 250
Sse9I AATT 2 cut(s) 136, 209
SspMI CTAG 2 cut(s) 126, 164
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 1 cut(s) 186
TasI AATT 2 cut(s) 136, 209
TfiI GAWTC 1 cut(s) 201
TseI GCWGC 1 cut(s) 221
XapI RAATTY 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 163
XspI CTAG 2 cut(s) 126, 164
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.