RchiOBHm_Chr2g0163951

S-adenosylmethionine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004538
Physical Location & Seq
Forward (+)
79212526 .. 79213793
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53208

Sequence Viewer

Length: 159 bp
ATGGAGTCAAAGGGTGGGAAAAAGAAGTCTAGCAGTAGTAATTCCTCATTATTCTACGAAGCTCCCCTAGGATACAGCATTGAAGACGTCAGACCTCACGGTGGAATCAAGAAATTCAGATCAGCTGCATACTCTAACTGCGTTCGAAAGCCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko01100 map00270 map00330 map01100
Pfam Domains
Protein Families
AdoMetDC_leader SAM_decarbox

Protein Analysis

52

Amino Acids

5.67

Weight (kDa)

9.84

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AdoMetDC_leader PF08132 1 - 52 1.4e-35 S-adenosyl-l-methionine decarboxylase leader peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 83
AluBI AGCT 2 cut(s) 62, 125
AluI AGCT 2 cut(s) 62, 125
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 113
AspA2I CCTAGG 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 145
AvrII CCTAGG 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 112
BciVI GTATCC 1 cut(s) 65
BfaI CTAG 2 cut(s) 30, 68
BfuI GTATCC 1 cut(s) 65
BisI GCNGC 1 cut(s) 126
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 67
Bsc4I CCNNNNNNNGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 145
Bsp143I GATC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 1 cut(s) 119
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 87
BstBI TTCGAA 1 cut(s) 145
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 90
BsuI GTATCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 152
CviJI RGCY 3 cut(s) 62, 125, 151
CviKI_1 RGCY 3 cut(s) 62, 125, 151
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaiI YATR 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 2 cut(s) 30, 68
FspEI CC 8 cut(s) 54, 58, 78, 79, 80, 84, 87, 108
GluI GCNGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 87
HinfI GANTC 2 cut(s) 5, 105
Hpy188I TCNGA 2 cut(s) 92, 119
Hpy188III TCNNGA 2 cut(s) 109, 156
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 2 cut(s) 30, 68
MaeII ACGT 1 cut(s) 87
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 95
MluCI AATT 2 cut(s) 40, 113
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 55, 105
MspA1I CMGCKG 1 cut(s) 125
NdeII GATC 1 cut(s) 119
NspV TTCGAA 1 cut(s) 145
PfeI GAWTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 125
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 1 cut(s) 119
SchI GAGTC 1 cut(s) 14
SetI ASST 4 cut(s) 64, 90, 97, 127
SfuI TTCGAA 1 cut(s) 145
SgeI CNNG 4 cut(s) 42, 80, 110, 121
Sse9I AATT 2 cut(s) 40, 113
SspMI CTAG 2 cut(s) 30, 68
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 40, 113
TfiI GAWTC 1 cut(s) 105
TseI GCWGC 1 cut(s) 125
XapI RAATTY 1 cut(s) 113
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 2 cut(s) 30, 68
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.