Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009359.1

Orthogroup ID

OG0004538

Physical Location & Seq

Genomic Coordinates Forward (+)

11195 .. 14575

Gene Structure 3381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009359.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgcaagtcaacgataacctaaaccggcttcaatctcttctctttggaaccgaactcgccgcccagagaaaagacttctcctccgctcagatctgcagtcttcgtcccacagtcccactcgatctcagcttgaccatgctttcgtcagccttattctccgcaaagccgtctccaagctcggtgaggctcgttgtccgcgcatttctgattccgattggtacgactgaatgtcaacacaggagactcaagtccccgacatcttcccccctcatggcatcagcagcttcaattaacttgagtgtctcggtgattgtcaccatttcaaaaaaacagcagtccacaccacctcttggggcaatgacggctttgcttcgaaatcttgatcatttcctctcaagctattcatctgttataagaaaatccgagatagaggatgcagaggaatgcttcaaactattttctttggaagaggcggctaaatttgacgaagtgacccttgccaatgtgaacaacttcaaaaagcgctcaaaaagccagtcacctaatgcaatccacaaaaaatatatagtggttacaattctggtggctactgatggagaacagaagttgcccaccatcagtggcactcgtgacttgaagaaagcattacataaacttggagccatttcctcgaacaaaataatgatgatttcttccaaggaagcaagctgcttgtcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1517

Protein Analysis

239

Amino Acids

26.07

Weight (kDa)

9.67

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28640
malus_domestica	MD09G1079900.v1.1 MD17G1070400.v1.1
prunus_persica	Prupe.1G299600_v2.0.a1 Prupe.3G243800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350481 RchiOBHm_Chr2g0163951 RchiOBHm_Chr4g0408541 RchiOBHm_Chr4g0436751 RchiOBHm_Chr7g0221071
rosa_laevigata	RLG00000021428
rosa_multiflora	Rmu_sc0009359.1_g000001 Rmu_ssc0000432.1_g000024
rosa_roxburghii	Rroxscaffold_2G00086900 Rroxscaffold_5G00358420
rosa_rugosa	Rorug02G0505100 Rorug03G0283900 Rorug04G0295800
rosa_samantha	Rh2BG373000 Rh2BG584500 Rh2CG309800 Rh2CG555400 Rh2DG349200 Rh4AG350200 Rh4BG359000 Rh4CG373400 Rh4DG353100 Rh5AG084500 Rh5CG494100 Rh6BG085300
rosa_wichuraiana	Rw2G047450 Rw4G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	86
AccII	CGCG	1 cut(s)	198
AciI	CCGC	5 cut(s)	60, 84, 159, 196, 473
AcsI	RAATTY	1 cut(s)	479
AfaI	GTAC	1 cut(s)	220
AfeI	AGCGCT	1 cut(s)	524
AfiI	CCNNNNNNNGG	2 cut(s)	271, 350
AgsI	TTSAA	6 cut(s)	32, 288, 324, 451, 517, 637
AhdI	GACNNNNNGTC	1 cut(s)	228
AluBI	AGCT	5 cut(s)	129, 177, 284, 399, 708
AluI	AGCT	5 cut(s)	129, 177, 284, 399, 708
Alw26I	GTCTC	3 cut(s)	174, 235, 307
Aor51HI	AGCGCT	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	281, 708
ApoI	RAATTY	1 cut(s)	479
ArsI	GACNNNNNNTTYG	4 cut(s)	124, 156, 521, 553
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	2 cut(s)	200, 525
AsuHPI	GGTGA	4 cut(s)	193, 307, 319, 531
AsuII	TTCGAA	1 cut(s)	373
BauI	CACGAG	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	293, 695
BccI	CCATC	2 cut(s)	587, 623
BceAI	ACGGC	2 cut(s)	151, 378
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	3 cut(s)	174, 235, 307
BfmI	CTRYAG	1 cut(s)	94
BfoI	RGCGCY	1 cut(s)	526
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	4 cut(s)	60, 282, 474, 709
BlsI	GCNGC	4 cut(s)	61, 283, 475, 710
BmeRI	GACNNNNNGTC	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	49, 661
BmsI	GCATC	2 cut(s)	284, 424
BoxI	GACNNNNGTC	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	373
BpuEI	CTTGAG	3 cut(s)	230, 316, 379
BsaJI	CCNNGG	1 cut(s)	696
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 350
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	271, 350
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	101, 139
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	293, 695
Bsh1236I	CGCG	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	3 cut(s)	90, 98, 235
BslI	CCNNNNNNNGG	2 cut(s)	271, 350
BsmAI	GTCTC	3 cut(s)	174, 235, 307
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	3 cut(s)	90, 98, 235
BsmI	GAATGC	1 cut(s)	449
Bsp119I	TTCGAA	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	90, 121, 382
BspACI	CCGC	5 cut(s)	60, 84, 159, 196, 473
BspCNI	CTCAG	2 cut(s)	100, 138
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	49, 661
BspMAI	CTGCAG	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	535
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	3 cut(s)	90, 121, 382
BssSI	CACGAG	1 cut(s)	627
BssT1I	CCWWGG	1 cut(s)	696
Bst2BI	CACGAG	1 cut(s)	627
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	42, 462
BstBI	TTCGAA	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	2 cut(s)	87, 125
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	200, 525
BstKTI	GATC	3 cut(s)	93, 124, 385
BstMAI	GTCTC	3 cut(s)	174, 235, 307
BstMBI	GATC	3 cut(s)	90, 121, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 362, 531
BstPAI	GACNNNNGTC	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	293, 695
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	1 cut(s)	706
CfoI	GCGC	2 cut(s)	200, 525
Cfr10I	RCCGGY	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	219
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviAII	CATG	2 cut(s)	136, 271
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	2 cut(s)	87, 125
DpnI	GATC	3 cut(s)	92, 123, 384
DpnII	GATC	3 cut(s)	90, 121, 382
DriI	GACNNNNNGTC	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	42, 462
Eam1105I	GACNNNNNGTC	1 cut(s)	228
EarI	CTCTTC	2 cut(s)	42, 462
Eco130I	CCWWGG	1 cut(s)	696
Eco47III	AGCGCT	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	139, 274
FaiI	YATR	7 cut(s)	137, 272, 413, 564, 566, 651, 718
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	3 cut(s)	90, 98, 235
FatI	CATG	2 cut(s)	135, 270
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	4 cut(s)	60, 282, 474, 709
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	4 cut(s)	60, 282, 474, 709
GlaI	GCGC	2 cut(s)	199, 524
GluI	GCNGC	4 cut(s)	60, 282, 474, 709
HaeII	RGCGCY	1 cut(s)	526
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	2 cut(s)	200, 525
Hin1II	CATG	2 cut(s)	139, 274
Hin6I	GCGC	2 cut(s)	198, 523
HinP1I	GCGC	2 cut(s)	198, 523
HincII	GTYRAC	2 cut(s)	10, 233
HindII	GTYRAC	2 cut(s)	10, 233
HinfI	GANTC	2 cut(s)	208, 243
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	4 cut(s)	193, 307, 319, 531
Hpy166II	GTNNAC	4 cut(s)	10, 233, 339, 508
Hpy188I	TCNGA	4 cut(s)	90, 207, 213, 424
Hpy188III	TCNNGA	2 cut(s)	380, 629
Hpy8I	GTNNAC	4 cut(s)	10, 233, 339, 508
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	4, 96, 437, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 362, 531
HpyF3I	CTNAG	2 cut(s)	87, 125
Hsp92II	CATG	2 cut(s)	139, 274
HspAI	GCGC	2 cut(s)	198, 523
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	90, 121, 382
LmnI	GCTCC	1 cut(s)	659
LpnPI	CCDG	5 cut(s)	38, 77, 223, 548, 566
Lsp1109I	GCAGC	2 cut(s)	293, 695
LweI	GCATC	2 cut(s)	284, 424
MaeIII	GTNAC	5 cut(s)	313, 490, 537, 571, 629
MalI	GATC	3 cut(s)	92, 123, 384
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	3 cut(s)	90, 121, 382
MboII	GAAGA	6 cut(s)	29, 92, 252, 479, 649, 684
MflI	RGATCY	1 cut(s)	90
MluCI	AATT	3 cut(s)	288, 479, 576
MlyI	GAGTC	1 cut(s)	237
MnlI	CCTC	9 cut(s)	91, 177, 278, 357, 401, 424, 433, 463, 679
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	1 cut(s)	291
MspI	CCGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	449
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	281, 362, 531
NdeII	GATC	3 cut(s)	90, 121, 382
NlaIII	CATG	2 cut(s)	139, 274
NlaIV	GGNNCC	2 cut(s)	49, 661
NmuCI	GTSAC	4 cut(s)	313, 490, 537, 629
NspV	TTCGAA	1 cut(s)	373
PctI	GAATGC	1 cut(s)	449
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	208
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	61, 283, 475, 710
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PshAI	GACNNNNGTC	1 cut(s)	247
PsiI	TTATAA	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	49, 661
PstI	CTGCAG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	4 cut(s)	60, 282, 474, 709
Sau3AI	GATC	3 cut(s)	90, 121, 382
SchI	GAGTC	1 cut(s)	237
SetI	ASST	8 cut(s)	21, 131, 179, 286, 349, 401, 544, 710
SfaNI	GCATC	2 cut(s)	284, 424
SfcI	CTRYAG	1 cut(s)	94
SfuI	TTCGAA	1 cut(s)	373
SmlI	CTYRAG	3 cut(s)	245, 295, 394
SmoI	CTYRAG	3 cut(s)	245, 295, 394
Sse9I	AATT	3 cut(s)	288, 479, 576
SsiI	CCGC	5 cut(s)	60, 84, 159, 196, 473
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	3 cut(s)	120, 373, 671
TasI	AATT	3 cut(s)	288, 479, 576
TauI	GCSGC	2 cut(s)	62, 476
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	4 cut(s)	313, 490, 537, 629
TseI	GCWGC	2 cut(s)	281, 708
Tsp45I	GTSAC	4 cut(s)	313, 490, 537, 629
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	625
Van91I	CCANNNNNTGG	1 cut(s)	350
XapI	RAATTY	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.