RLG00000021428

S-adenosyl-l-methionine decarboxylase leader peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004538
Physical Location & Seq
Forward (+)
75338805 .. 75342171
3367 bp
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UTR
Exon/CDS
Intron
RLM00000021428

Sequence Viewer

Length: 309 bp
ATGTCTTGTGAAAATGATAGGACACTGAAAGGACTAAATTCTCAAGGTTTCCATTATCTTGGTCGCCGTCCCAAAATTTCCTATCTTTTAGGTTTTGAATTGGAGGTTTCAAAAGGGGATCTTCGAAGGAGGTATAAACTGAATGAGCTAATGGAGTCAAAGGGTGGGAAAAAGAAGTCTAGCAGTAGTAAATCCTCATTATTCTACGAAGCTCCCCTAGGATACAGCATTGAAGACGTCAGACCTCACGGTGGAATCAAGAAATTCAGATCAGCTGCATACTCTAACTGCGTGCGAAAGCCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AdoMetDC_leader

Protein Analysis

103

Amino Acids

11.57

Weight (kDa)

9.92

Isoelectric Point (pI)

62.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AdoMetDC_leader PF08132 51 - 102 4.1e-34 S-adenosyl-l-methionine decarboxylase leader peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 3 cut(s) 37, 75, 263
AcyI GRCGYC 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 3 cut(s) 98, 111, 233
AluBI AGCT 3 cut(s) 148, 212, 275
AluI AGCT 3 cut(s) 148, 212, 275
AlwI GGATC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 3 cut(s) 37, 75, 263
AspA2I CCTAGG 1 cut(s) 217
AsuII TTCGAA 1 cut(s) 124
AvrII CCTAGG 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 51
BciVI GTATCC 1 cut(s) 215
BfaI CTAG 2 cut(s) 180, 218
BfuI GTATCC 1 cut(s) 215
BisI GCNGC 1 cut(s) 276
BlnI CCTAGG 1 cut(s) 217
BlsI GCNGC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 262
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 54
Bsp119I TTCGAA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 118, 269
BspPI GGATC 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 2 cut(s) 118, 269
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 293
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 2 cut(s) 121, 272
BstMBI GATC 2 cut(s) 118, 269
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 59
BstYI RGATCY 1 cut(s) 118
BsuI GTATCC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 293
CviJI RGCY 4 cut(s) 148, 212, 275, 301
CviKI_1 RGCY 4 cut(s) 148, 212, 275, 301
DpnI GATC 2 cut(s) 120, 271
DpnII GATC 2 cut(s) 118, 269
Eco130I CCWWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaiI YATR 2 cut(s) 135, 280
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 2 cut(s) 180, 218
GluI GCNGC 1 cut(s) 276
Hin1I GRCGYC 1 cut(s) 237
HinfI GANTC 2 cut(s) 155, 255
Hpy188I TCNGA 2 cut(s) 242, 269
Hpy188III TCNNGA 2 cut(s) 259, 306
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 118, 269
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 1 cut(s) 262
MaeI CTAG 2 cut(s) 180, 218
MaeII ACGT 1 cut(s) 237
MalI GATC 2 cut(s) 120, 271
MboI GATC 2 cut(s) 118, 269
MboII GAAGA 2 cut(s) 113, 245
MflI RGATCY 1 cut(s) 118
MluCI AATT 4 cut(s) 37, 75, 98, 263
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 4 cut(s) 97, 123, 205, 255
MspA1I CMGCKG 1 cut(s) 275
NdeII GATC 2 cut(s) 118, 269
NspV TTCGAA 1 cut(s) 124
PfeI GAWTC 1 cut(s) 255
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 275
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 2 cut(s) 118, 269
SchI GAGTC 1 cut(s) 164
SetI ASST 9 cut(s) 49, 94, 108, 134, 150, 214, 240, 247, 277
SfuI TTCGAA 1 cut(s) 124
SgeI CNNG 8 cut(s) 18, 56, 71, 192, 230, 260, 271, 304
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 4 cut(s) 37, 75, 98, 263
SspMI CTAG 2 cut(s) 180, 218
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 124
TasI AATT 4 cut(s) 37, 75, 98, 263
TfiI GAWTC 1 cut(s) 255
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 275
TspRI CASTG 1 cut(s) 30
XapI RAATTY 3 cut(s) 37, 75, 263
XmaJI CCTAGG 1 cut(s) 217
XspI CTAG 2 cut(s) 180, 218
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.