Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004538

Physical Location & Seq

Genomic Coordinates Forward (+)

29216565 .. 29217002

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGAGTCTAAAGGTGGGAAAAAGTCTAGCAGTAGTAAATCCTTATTCTACGAAGCACCTCTTGGATACAGCATTGAAGACATTCGACCTAACGGTGGCATCAAGAAGTTCAGATCTGCTGCTTACTCCAACTGCGCTCGCAAGCCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004014 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006576 GO:0006595 GO:0006596 GO:0006597 GO:0006807 GO:0008150 GO:0008152 GO:0008215 GO:0008216 GO:0008295 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0017144 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko00330 ko01100 map00270 map00330 map01100

Pfam Domains

Protein Families

AdoMetDC_leader SAM_decarbox

Protein Analysis

51

Amino Acids

5.43

Weight (kDa)

9.84

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AdoMetDC_leader	PF08132	1 - 50	8.3e-33	S-adenosyl-l-methionine decarboxylase leader peptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28640
malus_domestica	MD09G1079900.v1.1 MD17G1070400.v1.1
prunus_persica	Prupe.1G299600_v2.0.a1 Prupe.3G243800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350481 RchiOBHm_Chr2g0163951 RchiOBHm_Chr4g0408541 RchiOBHm_Chr4g0436751 RchiOBHm_Chr7g0221071
rosa_laevigata	RLG00000021428
rosa_multiflora	Rmu_sc0009359.1_g000001 Rmu_ssc0000432.1_g000024
rosa_roxburghii	Rroxscaffold_2G00086900 Rroxscaffold_5G00358420
rosa_rugosa	Rorug02G0505100 Rorug03G0283900 Rorug04G0295800
rosa_samantha	Rh2BG373000 Rh2BG584500 Rh2CG309800 Rh2CG555400 Rh2DG349200 Rh4AG350200 Rh4BG359000 Rh4CG373400 Rh4DG353100 Rh5AG084500 Rh5CG494100 Rh6BG085300
rosa_wichuraiana	Rw2G047450 Rw4G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	77
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
ApeKI	GCWGC	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	106
BciVI	GTATCC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	113
BssMI	GATC	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	139, 143
BstF5I	GGATG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	139, 143
CfoI	GCGC	1 cut(s)	137
CviJI	RGCY	1 cut(s)	145
CviKI_1	RGCY	1 cut(s)	145
DpnI	GATC	1 cut(s)	115
DpnII	GATC	1 cut(s)	113
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	27
FspEI	CC	7 cut(s)	48, 55, 72, 78, 81, 102, 142
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	5
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	2 cut(s)	103, 150
HpyCH4III	ACNGT	1 cut(s)	95
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	113
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	27
MalI	GATC	1 cut(s)	115
MboI	GATC	1 cut(s)	113
MboII	GAAGA	1 cut(s)	89
MflI	RGATCY	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	1 cut(s)	69
MroXI	GAANNNNTTC	1 cut(s)	81
NdeII	GATC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	113
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	14
SetI	ASST	3 cut(s)	16, 61, 91
SfaNI	GCATC	1 cut(s)	108
SgeI	CNNG	3 cut(s)	39, 74, 115
SspMI	CTAG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	85
TseI	GCWGC	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.