Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0022571

Physical Location & Seq

Genomic Coordinates Forward (+)

5385142 .. 5386921

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGGGCCGAGAAAAATGATGAACTGAGCATCTCAGAGAGCAGCGGAAATCCCGTGGTCGGCGGATCTAAAAAAGAAAGTGGTGGTGGGGTTTTTGGGGCTGTGTACAGTATGGCCATACTTCCCAAAGAGATTGAGCTCGAGAAGGAGGCTGCCCACCCGAAATCCGAGCTCCGATTTCAGCTCCCTGACCTCTCCCAACCCCTCAGAGATTTCTCGAGGACAAGGGAAGTTAGAGAGTTCCTAAGCGTGGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGTTACGCGTTGGATGTGAACGTGGAGAGGGCAGAAGATGTTCTAACACATAAGAGATTGCTGCAATTTGTAGAAGACCCTGCTAATCAACCTGCCTTTGAAGTTCGCTCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

140

Amino Acids

15.26

Weight (kDa)

5.13

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022571)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g07460
rosa_samantha	Rh1AG134300 Rh1CG127800 Rh3DG251000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
AccII	CGCG	1 cut(s)	311
AciI	CCGC	2 cut(s)	45, 63
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	114
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	59, 250
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	404
AluBI	AGCT	4 cut(s)	139, 172, 184, 278
AluI	AGCT	4 cut(s)	139, 172, 184, 278
Alw21I	GWGCWC	2 cut(s)	141, 174
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	73
Ama87I	CYCGRG	2 cut(s)	140, 217
AoxI	GGCC	2 cut(s)	6, 114
ApeKI	GCWGC	3 cut(s)	42, 152, 364
Asp700I	GAANNNNTTC	1 cut(s)	342
AspS9I	GGNCC	1 cut(s)	6
AvaI	CYCGRG	2 cut(s)	140, 217
BalI	TGGCCA	1 cut(s)	116
BanII	GRGCYC	2 cut(s)	141, 174
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	2 cut(s)	141, 174
BbvI	GCAGC	3 cut(s)	54, 139, 351
BccI	CCATC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	3 cut(s)	43, 153, 365
BlsI	GCNGC	3 cut(s)	44, 154, 366
BmeT110I	CYCGRG	2 cut(s)	140, 217
BmgT120I	GGNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	314
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 250
Bse3DI	GCAATG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	59, 250
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	3 cut(s)	17, 48, 220
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	54, 139, 351
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	8, 116
BsiHKAI	GWGCWC	2 cut(s)	141, 174
BsiHKCI	CYCGRG	2 cut(s)	140, 217
BslI	CCNNNNNNNGG	2 cut(s)	59, 250
BsmAI	GTCTC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	8, 116
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	2 cut(s)	140, 217
Bsp1286I	GDGCHC	2 cut(s)	141, 174
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	65
BspACI	CCGC	2 cut(s)	45, 63
BspANI	GGCC	2 cut(s)	8, 116
BspCNI	CTCAG	3 cut(s)	18, 47, 219
BspFNI	CGCG	1 cut(s)	311
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	273
BsrGI	TGTACA	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	105
BstDEI	CTNAG	4 cut(s)	26, 34, 206, 245
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	3 cut(s)	54, 139, 351
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	8, 116
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	322
BveI	ACCTGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	106
CviJI	RGCY	9 cut(s)	8, 101, 116, 139, 152, 172, 184, 254, 278
CviKI_1	RGCY	9 cut(s)	8, 101, 116, 139, 152, 172, 184, 254, 278
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	4 cut(s)	26, 34, 206, 245
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	2 cut(s)	139, 172
Eco24I	GRGCYC	2 cut(s)	141, 174
Eco31I	GGTCTC	1 cut(s)	290
Eco53kI	GAGCTC	2 cut(s)	139, 172
Eco88I	CYCGRG	2 cut(s)	140, 217
EcoICRI	GAGCTC	2 cut(s)	139, 172
EcoT38I	GRGCYC	2 cut(s)	141, 174
FaiI	YATR	3 cut(s)	113, 119, 354
FalI	AAGNNNNNCTT	4 cut(s)	238, 270, 267, 299
Fnu4HI	GCNGC	3 cut(s)	43, 153, 365
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	2 cut(s)	141, 174
Fsp4HI	GCNGC	3 cut(s)	43, 153, 365
GluI	GCNGC	3 cut(s)	43, 153, 365
HaeIII	GGCC	2 cut(s)	8, 116
Hpy166II	GTNNAC	2 cut(s)	106, 322
Hpy188I	TCNGA	4 cut(s)	37, 169, 176, 209
Hpy188III	TCNNGA	3 cut(s)	142, 217, 293
Hpy8I	GTNNAC	2 cut(s)	106, 322
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	4 cut(s)	26, 34, 206, 245
HpySE526I	ACGT	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	3 cut(s)	177, 189, 292
LpnPI	CCDG	4 cut(s)	201, 246, 396, 408
Lsp1109I	GCAGC	3 cut(s)	54, 139, 351
LweI	GCATC	1 cut(s)	39
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MboII	GAAGA	2 cut(s)	350, 389
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	141, 174
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	1 cut(s)	368
MluI	ACGCGT	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	142, 203, 213, 215, 300, 324
Mox20I	TGGCCA	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	342
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	1 cut(s)	65
NmeAIII	GCCGAG	1 cut(s)	34
PaeR7I	CTCGAG	2 cut(s)	140, 217
PdmI	GAANNNNTTC	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	44, 154, 366
Psp124BI	GAGCTC	2 cut(s)	141, 174
PspPI	GGNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	2 cut(s)	141, 174
SatI	GCNGC	3 cut(s)	43, 153, 365
Sau3AI	GATC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	6
SduI	GDGCHC	2 cut(s)	141, 174
SetI	ASST	7 cut(s)	141, 174, 186, 195, 280, 327, 397
SfaNI	GCATC	1 cut(s)	39
Sfr274I	CTCGAG	2 cut(s)	140, 217
SlaI	CTCGAG	2 cut(s)	140, 217
SmlI	CTYRAG	3 cut(s)	140, 217, 293
SmoI	CTYRAG	3 cut(s)	140, 217, 293
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	2 cut(s)	45, 63
SstI	GAGCTC	2 cut(s)	141, 174
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	2 cut(s)	141, 218
TasI	AATT	1 cut(s)	368
TatI	WGTACW	1 cut(s)	105
TseI	GCWGC	3 cut(s)	42, 152, 364
TspDTI	ATGAA	1 cut(s)	36
XhoI	CTCGAG	2 cut(s)	140, 217
XmnI	GAANNNNTTC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.