Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0022571

Physical Location & Seq

Genomic Coordinates Forward (+)

28182647 .. 28187282

Gene Structure 4636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG127800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTTAAGGAGGAAAAGCATGGCATTTGAATCACAGTCTATGAAGAAGGAGAAGAAGTACAGTGGGGTTTTTGGGGACATGTACACCAGTGTGGCCATTATTCCCAAAGACCTTGAGCTTGACAAGGAGGCCCACCCATCACCCTTTGAGCTCCACTTCCAATTCCCTGACCTCTCCCAACCCATCAGAGAATTCTTGAGGACAAGAGAAGTTGGAGAGTTCCTTAGTGGGGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGTCCGCGCGGAGGCACCTGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

102

Amino Acids

11.41

Weight (kDa)

7.88

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022571)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g07460
rosa_samantha	Rh1AG134300 Rh1CG127800 Rh3DG251000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccII	CGCG	2 cut(s)	289, 291
AciI	CCGC	2 cut(s)	287, 291
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	2 cut(s)	59, 83
AfiI	CCNNNNNNNGG	2 cut(s)	229, 293
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	29
AhdI	GACNNNNNGTC	1 cut(s)	282
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	3 cut(s)	118, 151, 257
AluI	AGCT	3 cut(s)	118, 151, 257
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	93, 129
ApoI	RAATTY	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	132
BalI	TGGCCA	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BccI	CCATC	3 cut(s)	145, 191, 287
BcoDI	GTCTC	1 cut(s)	269
BmeRI	GACNNNNNGTC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	298
BpuEI	CTTGAG	3 cut(s)	134, 217, 293
BsaI	GGTCTC	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 293
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	229, 293
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	258
Bsh1236I	CGCG	2 cut(s)	289, 291
BshFI	GGCC	2 cut(s)	95, 131
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	229, 293
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	95, 131
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	81
BspACI	CCGC	2 cut(s)	287, 291
BspANI	GGCC	2 cut(s)	95, 131
BspFNI	CGCG	2 cut(s)	289, 291
BspLI	GGNNCC	1 cut(s)	298
BspT107I	GGYRCC	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	36, 62
BstAUI	TGTACA	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	224
BstFNI	CGCG	2 cut(s)	289, 291
BstHHI	GCGC	1 cut(s)	291
BstMAI	GTCTC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	82
BstUI	CGCG	2 cut(s)	289, 291
BsuRI	GGCC	2 cut(s)	95, 131
BtsIMutI	CAGTG	2 cut(s)	67, 94
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	58, 82
CviAII	CATG	2 cut(s)	19, 79
CviJI	RGCY	6 cut(s)	95, 118, 131, 151, 233, 257
CviKI_1	RGCY	6 cut(s)	95, 118, 131, 151, 233, 257
CviQI	GTAC	2 cut(s)	58, 82
DdeI	CTNAG	1 cut(s)	224
DriI	GACNNNNNGTC	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	93
Eam1105I	GACNNNNNGTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	2 cut(s)	22, 82
FaiI	YATR	3 cut(s)	20, 41, 80
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	18, 78
FriOI	GRGCYC	1 cut(s)	153
GlaI	GCGC	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	95, 131
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	22, 82
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	29
HphI	GGTGA	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	2 cut(s)	196, 272
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	36, 62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	22, 82
HspAI	GCGC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	156, 271
LpnPI	CCDG	3 cut(s)	100, 180, 225
MboII	GAAGA	2 cut(s)	55, 64
MhlI	GDGCHC	1 cut(s)	153
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	2 cut(s)	161, 191
MluNI	TGGCCA	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	6 cut(s)	3, 121, 182, 192, 279, 287
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	95
MvnI	CGCG	2 cut(s)	289, 291
MwoI	GCNNNNNNNGC	1 cut(s)	263
NlaIII	CATG	2 cut(s)	22, 82
NlaIV	GGNNCC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	82
OliI	CACNNNNGTG	1 cut(s)	89
PciI	ACATGT	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	29
PscI	ACATGT	1 cut(s)	78
Psp124BI	GAGCTC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	130
RsaI	GTAC	2 cut(s)	59, 83
RsaNI	GTAC	2 cut(s)	58, 82
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	6 cut(s)	114, 120, 153, 174, 259, 302
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	3 cut(s)	113, 196, 272
SmoI	CTYRAG	3 cut(s)	113, 196, 272
Sse9I	AATT	2 cut(s)	161, 191
SsiI	CCGC	2 cut(s)	287, 291
SstI	GAGCTC	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	36, 62
TasI	AATT	2 cut(s)	161, 191
TatI	WGTACW	2 cut(s)	57, 81
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	67, 94
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	67, 94
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.