Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0022571

Physical Location & Seq

Genomic Coordinates Reverse (-)

24728156 .. 24728914

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG251000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGACTTCTCAAAATCAATGTCCCCAAAACCCCACTCCCTCTCCCTCTCTCAGGAAAAGCATGGCATTTGAATCACAGTCTATGAAGAAGGAGAAGAAGTACAGTGGGGTTTTTGGGGACATGTACACCAGTGTGGCCATTATTCCCAAAGACCTTGAGCTTGACAAGGAGGCCCACCCATCACCCTTTGAGCTCCACTTCCAATTCCCTGACCTCTCCCAACCCATCAGAGGATTCTTGAGGACAAGAGAAGTTGGAGAGTTCCTTAGTGGGGCTTTAGCATTCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

96

Amino Acids

10.88

Weight (kDa)

7.89

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022571)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g07460
rosa_samantha	Rh1AG134300 Rh1CG127800 Rh3DG251000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	286
AcoI	YGGCCR	1 cut(s)	135
AfaI	GTAC	2 cut(s)	101, 125
AfiI	CCNNNNNNNGG	3 cut(s)	51, 230, 271
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	71
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	2 cut(s)	160, 193
AluI	AGCT	2 cut(s)	160, 193
Alw21I	GWGCWC	1 cut(s)	195
AoxI	GGCC	2 cut(s)	135, 171
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	2 cut(s)	187, 233
BmgT120I	GGNCC	1 cut(s)	172
BpuEI	CTTGAG	2 cut(s)	176, 259
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 83, 113
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 230, 271
Bse1I	ACTGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	51, 230, 271
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	137, 173
BsiHKAI	GWGCWC	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	6, 131
BslI	CCNNNNNNNGG	3 cut(s)	51, 230, 271
BsmFI	GGGAC	2 cut(s)	6, 131
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	137, 173
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	123
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	137, 173
BspCNI	CTCAG	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	78, 104
BstAUI	TGTACA	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	50, 266
BstENI	CCTNNNNNAGG	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	137, 173
BtsIMutI	CAGTG	2 cut(s)	109, 136
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	100, 124
CviAII	CATG	2 cut(s)	61, 121
CviJI	RGCY	5 cut(s)	137, 160, 173, 193, 275
CviKI_1	RGCY	5 cut(s)	137, 160, 173, 193, 275
CviQI	GTAC	2 cut(s)	100, 124
DdeI	CTNAG	2 cut(s)	50, 266
EaeI	YGGCCR	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	2 cut(s)	64, 124
FaiI	YATR	3 cut(s)	62, 83, 122
FaqI	GGGAC	2 cut(s)	6, 131
FatI	CATG	2 cut(s)	60, 120
FriOI	GRGCYC	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	137, 173
Hin1II	CATG	2 cut(s)	64, 124
HinfI	GANTC	2 cut(s)	71, 234
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	2 cut(s)	52, 238
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	78, 104
HpyF3I	CTNAG	2 cut(s)	50, 266
Hsp92II	CATG	2 cut(s)	64, 124
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	3 cut(s)	37, 142, 222
MboII	GAAGA	2 cut(s)	97, 106
MhlI	GDGCHC	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	1 cut(s)	203
MluNI	TGGCCA	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	6 cut(s)	49, 55, 163, 224, 224, 234
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	64, 124
NspI	RCATGY	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	131
PciI	ACATGT	1 cut(s)	120
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	71, 234
PscI	ACATGT	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	172
RsaI	GTAC	2 cut(s)	101, 125
RsaNI	GTAC	2 cut(s)	100, 124
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	4 cut(s)	156, 162, 195, 216
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	155, 238
SmoI	CTYRAG	2 cut(s)	155, 238
Sse9I	AATT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	286
SstI	GAGCTC	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	78, 104
TasI	AATT	1 cut(s)	203
TatI	WGTACW	2 cut(s)	99, 123
TfiI	GAWTC	2 cut(s)	71, 234
TscAI	CASTG	2 cut(s)	109, 136
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	109, 136
XagI	CCTNNNNNAGG	1 cut(s)	49
XceI	RCATGY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.