Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0022571

Physical Location & Seq

Genomic Coordinates Forward (+)

25680649 .. 25684660

Gene Structure 4012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCATTTGAATCACAGTCTATGAAGAAGGAGAAGAAGTACAGTGGGGTTTTTGGGGACATGTACACCAGTGTGGCCATTATTCCCAAAGACCTTGAGCTTGACAAGGAGGCCCACCCATCACCCTTTGAGCTCCACTTCCAATTCCCTGACCTCTCCCAACCCATCAGAGAATTCTTGAGGACAAGAGAAGTTGGAGAGTTCCTTAGTGGGGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006862 GO:0008150 GO:0015711 GO:0015748 GO:0015780 GO:0015865 GO:0015866 GO:0015868 GO:0015931 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

89

Amino Acids

10.02

Weight (kDa)

5.63

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022571)

Species	Orthologous Gene IDs
pyrus_communis	pycom17g07460
rosa_samantha	Rh1AG134300 Rh1CG127800 Rh3DG251000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	2 cut(s)	41, 65
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	11
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	100, 133, 239
AluI	AGCT	3 cut(s)	100, 133, 239
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	2 cut(s)	75, 111
ApoI	RAATTY	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	3 cut(s)	127, 173, 269
BcoDI	GTCTC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	112
BpuEI	CTTGAG	2 cut(s)	116, 199
BsaI	GGTCTC	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	77, 113
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	77, 113
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp1407I	TGTACA	1 cut(s)	63
BspANI	GGCC	2 cut(s)	77, 113
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	18, 44
BstAUI	TGTACA	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	206
BstMAI	GTCTC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	77, 113
BtsIMutI	CAGTG	2 cut(s)	49, 76
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	40, 64
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	6 cut(s)	77, 100, 113, 133, 215, 239
CviKI_1	RGCY	6 cut(s)	77, 100, 113, 133, 215, 239
CviQI	GTAC	2 cut(s)	40, 64
DdeI	CTNAG	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	23, 62
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	77, 113
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	178, 254
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	2 cut(s)	18, 44
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	138, 253
LpnPI	CCDG	4 cut(s)	82, 162, 207, 250
MboII	GAAGA	2 cut(s)	37, 46
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	2 cut(s)	143, 173
MluNI	TGGCCA	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	103, 164, 174, 261
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	64
NspI	RCATGY	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	71
PciI	ACATGT	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	11
PscI	ACATGT	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	112
RsaI	GTAC	2 cut(s)	41, 65
RsaNI	GTAC	2 cut(s)	40, 64
RseI	CAYNNNNRTG	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	6 cut(s)	96, 102, 135, 156, 241, 269
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	3 cut(s)	95, 178, 254
SmoI	CTYRAG	3 cut(s)	95, 178, 254
Sse9I	AATT	2 cut(s)	143, 173
SstI	GAGCTC	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	18, 44
TasI	AATT	2 cut(s)	143, 173
TatI	WGTACW	2 cut(s)	39, 63
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	2 cut(s)	49, 76
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	49, 76
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.