Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012460

Physical Location & Seq

Genomic Coordinates Reverse (-)

5956778 .. 5958179

Gene Structure 1402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATTATAGAGGAAGAAAAAAATAGCGCCCATTACCAAATCAAACATGGGCCGTTGATTTCAGATCCAAAACTGTCTGCTCCAACCAAACCAACGAACAAACAAACCACCAAAATCTCATCACCTTCTTCCTCACCATCGAACCATCTGAATCTCTCTCCATCTCCCATCGCATTATCGCAAATCCAGCGAGAGATGCAGACCCGGTTCACGGCCCTAGCGGCTCGGACCCTAAAATCGACCGCCCGGTCCTTCTCCTCCTCCTCCACGCAAACCCCGCCCTCAACTGCCGCAACCTCCTCCCGGTTCCCACAAACTCTGGCGGGCCTCCGGGCCCGCCTCGCCGCCGAGTCTCCGGTTCTGACGGACTTCGTGGAAGGCGAAGGCCCGTACTCCGTCGAAGTCGGAACCAAGAAGAATCCTCTCCCGAAGCCGAAATGGATGAAGGAGTCAATCCCCGGCGGCCAAAAGTACACTCAGATCAAGAAAAAGCTCAGAGAATTGAAGCTCCACACCGTGTGCGAGGAGGCCAAGTGCCCCAACCTCAGCGAGTGCTGGTCCGGCGGAGAGACTGGCACCGCCACCGCCACGATTATGATTCTCGGTGATACGTTTTGTAATGTGAAGACTTCCAGGACTCCGCCGCCGCCGGATCCTAATGAACCGACCAATGTGGCCGAGGCGATTGCGTCTTGGGGTTTGGATTACGTGGTGATTACTAGCGTGGACCGGGACGATTTGATCGATCAAGGGAGTGGACATTTTGCAGAGACCGTGCAAAAATTGAAGGTGCTCAAACCCAGCATGCTCATTGAGGCTTTGGTTCCTGATTTTCGGGGAGACTCGAGCTGTGTAGAGAAAGTTGCAACATCAGGATTAGATGTCCTTGCACACAATATAGAGACGGTTGAAGAGCTTCAGAGGGCAGTGCGGGATCGATCGTGCCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

318

Amino Acids

34.44

Weight (kDa)

8.15

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	111 - 179	8.3e-15	N-terminal domain of lipoyl synthase of Radical_SAM family
Radical_SAM	PF04055	204 - 311	9.5e-07	Radical SAM superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20860 AT2G20860 AT2G20860
fragaria_vesca	FvH4_6g44960
malus_domestica	MD09G1091400.v1.1 MD17G1081300.v1.1
prunus_persica	Prupe.3G233600_v2.0.a1
pyrus_communis	pycom09g01700 pycom17g07960
rosa_chinensis	RchiOBHm_Chr2g0162201
rosa_laevigata	RLG00000021327
rosa_multiflora	Rmu_sc0004020.1_g000029
rosa_roxburghii	Rroxscaffold_2G00088250
rosa_rugosa	Rorug02G0495200
rosa_samantha	Rh2AG561600 Rh2BG574700 Rh2CG544900 Rh2DG584700
rosa_wichuraiana	Rw2G046510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	575
AclWI	GGATC	4 cut(s)	59, 647, 660, 942
AcoI	YGGCCR	2 cut(s)	463, 675
AcuI	CTGAAG	1 cut(s)	902
AdeI	CACNNNGTG	2 cut(s)	517, 519
AfaI	GTAC	2 cut(s)	392, 473
AfiI	CCNNNNNNNGG	2 cut(s)	211, 303
AgsI	TTSAA	3 cut(s)	505, 787, 911
AjnI	CCWGG	1 cut(s)	632
AluBI	AGCT	4 cut(s)	493, 508, 849, 916
AluI	AGCT	4 cut(s)	493, 508, 849, 916
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	5 cut(s)	357, 563, 764, 834, 896
AlwI	GGATC	4 cut(s)	59, 647, 660, 942
Ama87I	CYCGRG	1 cut(s)	844
AoxI	GGCC	8 cut(s)	50, 213, 325, 333, 385, 463, 528, 675
ApaI	GGGCCC	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	915
AspLEI	GCGC	1 cut(s)	29
AsuC2I	CCSGG	6 cut(s)	205, 247, 304, 332, 459, 731
AsuHPI	GGTGA	4 cut(s)	114, 126, 617, 724
AvaI	CYCGRG	1 cut(s)	844
AvaII	GGWCC	4 cut(s)	228, 249, 558, 727
BaeGI	GKGCMC	2 cut(s)	337, 539
BamHI	GGATCC	1 cut(s)	652
BanI	GGYRCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	795
BbvCI	CCTCAGC	1 cut(s)	545
BccI	CCATC	4 cut(s)	145, 153, 169, 176
BceAI	ACGGC	2 cut(s)	37, 228
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	1 cut(s)	634
BcnI	CCSGG	6 cut(s)	205, 247, 304, 332, 459, 731
BcoDI	GTCTC	5 cut(s)	357, 563, 764, 834, 896
BfaI	CTAG	2 cut(s)	218, 720
BfoI	RGCGCY	1 cut(s)	30
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	6 cut(s)	222, 291, 345, 463, 644, 647
BlsI	GCNGC	6 cut(s)	223, 292, 346, 464, 645, 648
Bme1390I	CCNGG	7 cut(s)	205, 247, 304, 332, 459, 634, 731
Bme18I	GGWCC	4 cut(s)	228, 249, 558, 727
BmeT110I	CYCGRG	1 cut(s)	844
BmiI	GGNNCC	7 cut(s)	230, 308, 335, 409, 577, 654, 825
BmrFI	CCNGG	7 cut(s)	205, 247, 304, 332, 459, 634, 731
BmsI	GCATC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	632
Bpu10I	CCTNAGC	1 cut(s)	545
BpuMI	CCSGG	6 cut(s)	205, 247, 304, 332, 459, 731
Bsa29I	ATCGAT	2 cut(s)	744, 937
BsaAI	YACGTR	1 cut(s)	709
BsaI	GGTCTC	1 cut(s)	764
BsaJI	CCNNGG	2 cut(s)	457, 678
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 303
Bse1I	ACTGG	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	634
BseCI	ATCGAT	2 cut(s)	744, 937
BseDI	CCNNGG	2 cut(s)	457, 678
BseGI	GGATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	211, 303
BseMII	CTCAG	3 cut(s)	491, 508, 559
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	5 cut(s)	247, 250, 253, 289, 539
BseSI	GKGCMC	2 cut(s)	337, 539
BseYI	CCCAGC	1 cut(s)	800
Bsh1285I	CGRYCG	2 cut(s)	243, 941
BshFI	GGCC	8 cut(s)	52, 215, 327, 335, 387, 465, 530, 677
BshNI	GGYRCC	1 cut(s)	575
BshVI	ATCGAT	2 cut(s)	744, 937
BsiEI	CGRYCG	2 cut(s)	243, 941
BsiHKAI	GWGCWC	1 cut(s)	795
BsiHKCI	CYCGRG	1 cut(s)	844
BsiSI	CCGG	9 cut(s)	205, 247, 304, 331, 356, 459, 561, 650, 730
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	2 cut(s)	211, 303
BsmAI	GTCTC	5 cut(s)	357, 563, 764, 834, 896
BsmBI	CGTCTC	1 cut(s)	896
BsmFI	GGGAC	1 cut(s)	746
BsnI	GGCC	8 cut(s)	52, 215, 327, 335, 387, 465, 530, 677
Bso31I	GGTCTC	1 cut(s)	764
BsoBI	CYCGRG	1 cut(s)	844
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	3 cut(s)	337, 539, 795
Bsp143I	GATC	7 cut(s)	64, 480, 652, 741, 745, 934, 938
BspANI	GGCC	8 cut(s)	52, 215, 327, 335, 387, 465, 530, 677
BspCNI	CTCAG	3 cut(s)	490, 507, 558
BspDI	ATCGAT	2 cut(s)	744, 937
BspLI	GGNNCC	7 cut(s)	230, 308, 335, 409, 577, 654, 825
BspPI	GGATC	4 cut(s)	59, 647, 660, 942
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	1 cut(s)	575
BspTNI	GGTCTC	1 cut(s)	764
BsrI	ACTGG	1 cut(s)	577
BssECI	CCNNGG	2 cut(s)	457, 678
BssMI	GATC	7 cut(s)	64, 480, 652, 741, 745, 934, 938
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	4 cut(s)	75, 517, 775, 907
Bst6I	CTCTTC	1 cut(s)	906
BstBAI	YACGTR	1 cut(s)	709
BstC8I	GCNNGC	3 cut(s)	325, 337, 806
BstDEI	CTNAG	3 cut(s)	477, 494, 545
BstF5I	GGATG	1 cut(s)	447
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	7 cut(s)	67, 483, 655, 744, 748, 937, 941
BstMAI	GTCTC	5 cut(s)	357, 563, 764, 834, 896
BstMBI	GATC	7 cut(s)	64, 480, 652, 741, 745, 934, 938
BstMCI	CGRYCG	2 cut(s)	243, 941
BstMWI	GCNNNNNNNGC	6 cut(s)	187, 196, 221, 277, 341, 561
BstNI	CCWGG	1 cut(s)	634
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	7 cut(s)	203, 245, 302, 330, 457, 632, 729
BstSLI	GKGCMC	2 cut(s)	337, 539
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	2 cut(s)	64, 652
BstYI	RGATCY	2 cut(s)	64, 652
Bsu15I	ATCGAT	2 cut(s)	744, 937
BsuRI	GGCC	8 cut(s)	52, 215, 327, 335, 387, 465, 530, 677
BsuTUI	ATCGAT	2 cut(s)	744, 937
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	447
BtsI	GCAGTG	1 cut(s)	933
BtsIMutI	CAGTG	1 cut(s)	933
Cac8I	GCNNGC	3 cut(s)	325, 337, 806
CfoI	GCGC	1 cut(s)	29
ClaI	ATCGAT	2 cut(s)	744, 937
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	2 cut(s)	391, 472
CviAII	CATG	2 cut(s)	47, 805
CviQI	GTAC	2 cut(s)	391, 472
DdeI	CTNAG	3 cut(s)	477, 494, 545
DpnI	GATC	7 cut(s)	66, 482, 654, 743, 747, 936, 940
DpnII	GATC	7 cut(s)	64, 480, 652, 741, 745, 934, 938
DraIII	CACNNNGTG	2 cut(s)	517, 519
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	463, 675
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
EciI	GGCGGA	2 cut(s)	579, 630
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	764
Eco47I	GGWCC	4 cut(s)	228, 249, 558, 727
Eco57I	CTGAAG	1 cut(s)	902
Eco88I	CYCGRG	1 cut(s)	844
EcoRII	CCWGG	1 cut(s)	632
EcoT38I	GRGCYC	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	896
FaeI	CATG	2 cut(s)	50, 808
FaiI	YATR	5 cut(s)	8, 48, 596, 806, 899
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	2 cut(s)	46, 804
FauI	CCCGC	4 cut(s)	285, 316, 344, 924
Fnu4HI	GCNGC	6 cut(s)	222, 291, 345, 463, 644, 647
FokI	GGATG	1 cut(s)	454
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	6 cut(s)	222, 291, 345, 463, 644, 647
FspBI	CTAG	2 cut(s)	218, 720
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	6 cut(s)	222, 291, 345, 463, 644, 647
GsaI	CCCAGC	1 cut(s)	804
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	8 cut(s)	52, 215, 327, 335, 387, 465, 530, 677
HapII	CCGG	9 cut(s)	205, 247, 304, 331, 356, 459, 561, 650, 730
HgaI	GACGC	1 cut(s)	678
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	50, 808
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	7 cut(s)	151, 350, 418, 449, 598, 637, 842
HpaII	CCGG	9 cut(s)	205, 247, 304, 331, 356, 459, 561, 650, 730
HphI	GGTGA	4 cut(s)	114, 126, 617, 724
Hpy166II	GTNNAC	4 cut(s)	210, 474, 727, 758
Hpy188I	TCNGA	8 cut(s)	64, 150, 228, 363, 407, 480, 497, 921
Hpy188III	TCNNGA	4 cut(s)	427, 484, 827, 873
Hpy8I	GTNNAC	4 cut(s)	210, 474, 727, 758
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	6 cut(s)	135, 262, 371, 377, 439, 781
HpyCH4III	ACNGT	4 cut(s)	75, 517, 775, 907
HpyCH4IV	ACGT	2 cut(s)	611, 708
HpyCH4V	TGCA	5 cut(s)	199, 767, 778, 866, 890
HpyF10VI	GCNNNNNNNGC	6 cut(s)	187, 196, 221, 277, 341, 561
HpyF3I	CTNAG	3 cut(s)	477, 494, 545
HpySE526I	ACGT	2 cut(s)	611, 708
Hsp92II	CATG	2 cut(s)	50, 808
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	7 cut(s)	64, 480, 652, 741, 745, 934, 938
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	2 cut(s)	85, 513
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	2 cut(s)	218, 720
MaeII	ACGT	2 cut(s)	611, 708
MalI	GATC	7 cut(s)	66, 482, 654, 743, 747, 936, 940
MboI	GATC	7 cut(s)	64, 480, 652, 741, 745, 934, 938
MboII	GAAGA	5 cut(s)	26, 120, 427, 637, 923
MflI	RGATCY	2 cut(s)	64, 652
MhlI	GDGCHC	3 cut(s)	337, 539, 795
MluCI	AATT	3 cut(s)	500, 782, 947
MlyI	GAGTC	4 cut(s)	359, 458, 631, 836
MmeI	TCCRAC	2 cut(s)	107, 385
MroXI	GAANNNNTTC	1 cut(s)	915
MseI	TTAA	1 cut(s)	952
MslI	CAYNNNNRTG	1 cut(s)	593
MspI	CCGG	9 cut(s)	205, 247, 304, 331, 356, 459, 561, 650, 730
MspR9I	CCNGG	7 cut(s)	205, 247, 304, 332, 459, 634, 731
MvaI	CCWGG	1 cut(s)	634
MwoI	GCNNNNNNNGC	6 cut(s)	187, 196, 221, 277, 341, 561
NciI	CCSGG	6 cut(s)	205, 247, 304, 332, 459, 731
NdeII	GATC	7 cut(s)	64, 480, 652, 741, 745, 934, 938
NlaIII	CATG	2 cut(s)	50, 808
NlaIV	GGNNCC	7 cut(s)	230, 308, 335, 409, 577, 654, 825
NmeAIII	GCCGAG	2 cut(s)	373, 703
NspI	RCATGY	1 cut(s)	808
PaeI	GCATGC	1 cut(s)	808
PaeR7I	CTCGAG	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	906
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 741
PdmI	GAANNNNTTC	1 cut(s)	915
PfeI	GAWTC	3 cut(s)	151, 418, 598
PfoI	TCCNGGA	1 cut(s)	632
PkrI	GCNGC	6 cut(s)	223, 292, 346, 464, 645, 648
Ple19I	CGATCG	1 cut(s)	941
PleI	GAGTC	4 cut(s)	358, 457, 631, 836
PpsI	GAGTC	4 cut(s)	358, 457, 631, 836
Ppu21I	YACGTR	1 cut(s)	709
Psp6I	CCWGG	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	1 cut(s)	632
PspN4I	GGNNCC	7 cut(s)	230, 308, 335, 409, 577, 654, 825
PspOMI	GGGCCC	1 cut(s)	333
PspXI	VCTCGAGB	1 cut(s)	844
PsuI	RGATCY	2 cut(s)	64, 652
PvuI	CGATCG	1 cut(s)	941
RsaI	GTAC	2 cut(s)	392, 473
RsaNI	GTAC	2 cut(s)	391, 472
RseI	CAYNNNNRTG	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	1 cut(s)	952
SatI	GCNGC	6 cut(s)	222, 291, 345, 463, 644, 647
Sau3AI	GATC	7 cut(s)	64, 480, 652, 741, 745, 934, 938
SchI	GAGTC	4 cut(s)	359, 458, 631, 836
ScrFI	CCNGG	7 cut(s)	205, 247, 304, 332, 459, 634, 731
SduI	GDGCHC	3 cut(s)	337, 539, 795
SfaNI	GCATC	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	844
SinI	GGWCC	4 cut(s)	228, 249, 558, 727
SlaI	CTCGAG	1 cut(s)	844
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
SphI	GCATGC	1 cut(s)	808
Sse9I	AATT	3 cut(s)	500, 782, 947
SspMI	CTAG	2 cut(s)	218, 720
StyD4I	CCNGG	7 cut(s)	203, 245, 302, 330, 457, 632, 729
TaaI	ACNGT	4 cut(s)	75, 517, 775, 907
TaiI	ACGT	2 cut(s)	614, 711
TaqI	TCGA	6 cut(s)	140, 239, 399, 744, 845, 937
TasI	AATT	3 cut(s)	500, 782, 947
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	6 cut(s)	224, 293, 347, 465, 646, 649
TfiI	GAWTC	3 cut(s)	151, 418, 598
Tru1I	TTAA	1 cut(s)	952
Tru9I	TTAA	1 cut(s)	952
TscAI	CASTG	1 cut(s)	933
TspDTI	ATGAA	2 cut(s)	458, 675
TspGWI	ACGGA	2 cut(s)	380, 385
TspRI	CASTG	1 cut(s)	933
VpaK11BI	GGWCC	4 cut(s)	228, 249, 558, 727
XceI	RCATGY	1 cut(s)	808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	2 cut(s)	218, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.