pycom17g08000

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
5990051 .. 5990257
207 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGTGGTGTTTTGTTTTCTGGTGGATCAGAAGAGGCAAGTGCAGGGGAGCAAGCCGGCGGCGGGAATATGCTCGCGGTGCGGCGGGGGAGCGAGCGTGGCGGACATGAAGACCGCTACAAGATTTTGTTACGTCCCGTTTTATTGGAAATCTTGGAGGGCCATAATATGTACTTTCTGTGGAGCTGTTCTTCGTTCTTATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.59

Weight (kDa)

9.63

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20835
malus_domestica MD09G1091900.v1.1 MD17G1081800.v1.1
prunus_persica Prupe.3G233100_v2.0.a1
pyrus_communis pycom09g01740 pycom17g08000
rosa_chinensis RchiOBHm_Chr2g0162101
rosa_roxburghii Rroxscaffold_2G00088300
rosa_samantha Rh2DG584200
rosa_wichuraiana Rw2G046460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 76
AciI CCGC 7 cut(s) 59, 62, 76, 81, 84, 101, 114
AclWI GGATC 1 cut(s) 33
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 62
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AlwI GGATC 1 cut(s) 33
AoxI GGCC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 116
BisI GCNGC 2 cut(s) 60, 82
BlsI GCNGC 2 cut(s) 61, 83
BmgT120I GGNCC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 116
Bsa29I ATCGAT 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 55
BseCI ATCGAT 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 202
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 161
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 7 cut(s) 59, 62, 76, 81, 84, 101, 114
BspANI GGCC 1 cut(s) 161
BspDI ATCGAT 1 cut(s) 202
BspFNI CGCG 1 cut(s) 76
BspPI GGATC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 4 cut(s) 53, 57, 74, 94
BstFNI CGCG 1 cut(s) 76
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 78, 98
BstUI CGCG 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 202
BsuRI GGCC 1 cut(s) 161
BsuTUI ATCGAT 1 cut(s) 202
Cac8I GCNNGC 4 cut(s) 53, 57, 74, 94
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 202
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 106
CviJI RGCY 3 cut(s) 55, 161, 185
CviKI_1 RGCY 3 cut(s) 55, 161, 185
CviQI GTAC 1 cut(s) 171
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EciI GGCGGA 1 cut(s) 116
FaeI CATG 1 cut(s) 109
FaiI YATR 4 cut(s) 70, 107, 164, 169
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 105
FauI CCCGC 2 cut(s) 55, 77
Fnu4HI GCNGC 2 cut(s) 60, 82
Fsp4HI GCNGC 2 cut(s) 60, 82
GluI GCNGC 2 cut(s) 60, 82
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 56
Hin1II CATG 1 cut(s) 109
HpaII CCGG 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 98
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 109
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 3 cut(s) 48, 89, 182
LpnPI CCDG 3 cut(s) 5, 29, 69
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 3 cut(s) 43, 121, 182
MnlI CCTC 2 cut(s) 27, 150
MroNI GCCGGC 1 cut(s) 55
MspI CCGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 78, 98
NaeI GCCGGC 1 cut(s) 57
NdeII GATC 1 cut(s) 25
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 61, 83
PspPI GGNCC 1 cut(s) 159
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SatI GCNGC 2 cut(s) 60, 82
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 159
SetI ASST 2 cut(s) 135, 187
SsiI CCGC 7 cut(s) 59, 62, 76, 81, 84, 101, 114
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 202
TatI WGTACW 1 cut(s) 170
TauI GCSGC 2 cut(s) 62, 84
TspDTI ATGAA 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.