Rroxscaffold_2G00088300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018280
Physical Location & Seq
Forward (+)
10266361 .. 10270465
4105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088300.1

Sequence Viewer

Length: 270 bp
ATGCATGTGCGTAGAAGACACTATGTAATGTATAGGGTGGTGTTCACTTGGTCGAAGTCTAGCATGGTGGTGTTTTGCTTTCTGGTGGATCAGACGAAGCAAGTGCGGGGGAGCAAGCCGGCGGCCGGAATATGCTCGAGGTGCGGCGGTGGAGCTAGCGTCGCTGATATGAAAACCGCCACCAGATTTTGTTACGTGCCGTTGTACTGGAAGTCTTCGAAAGCCATCATATGTACTTTCTGCGGAGCAGTTCTTAAATCTTACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.02

Weight (kDa)

9.94

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20835
malus_domestica MD09G1091900.v1.1 MD17G1081800.v1.1
prunus_persica Prupe.3G233100_v2.0.a1
pyrus_communis pycom09g01740 pycom17g08000
rosa_chinensis RchiOBHm_Chr2g0162101
rosa_roxburghii Rroxscaffold_2G00088300
rosa_samantha Rh2DG584200
rosa_wichuraiana Rw2G046460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 106, 122, 144, 147, 177, 243
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 123
AfaI GTAC 2 cut(s) 206, 235
AfiI CCNNNNNNNGG 1 cut(s) 125
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 1 cut(s) 123
AsuII TTCGAA 1 cut(s) 218
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 136
BbsI GAAGAC 2 cut(s) 22, 207
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BfaI CTAG 2 cut(s) 60, 156
BisI GCNGC 2 cut(s) 123, 145
BlsI GCNGC 2 cut(s) 124, 146
BmeT110I CYCGRG 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 159
BpiI GAAGAC 2 cut(s) 22, 207
Bpu14I TTCGAA 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 212
BseX3I CGGCCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 2 cut(s) 119, 126
BslI CCNNNNNNNGG 1 cut(s) 125
BsnI GGCC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 218
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 6 cut(s) 106, 122, 144, 147, 177, 243
BspANI GGCC 1 cut(s) 125
BspOI GCTAGC 1 cut(s) 159
BspPI GGATC 1 cut(s) 96
BspT104I TTCGAA 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 118
BssMI GATC 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 116, 120, 157
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 141, 161
BstNSI RCATGY 1 cut(s) 8
BstV2I GAAGAC 2 cut(s) 22, 207
BstZI CGGCCG 1 cut(s) 123
BsuRI GGCC 1 cut(s) 125
Cac8I GCNNGC 3 cut(s) 116, 120, 157
Cfr10I RCCGGY 1 cut(s) 118
CseI GACGC 1 cut(s) 148
Csp6I GTAC 2 cut(s) 205, 234
CviAII CATG 2 cut(s) 5, 64
CviJI RGCY 4 cut(s) 118, 125, 155, 224
CviKI_1 RGCY 4 cut(s) 118, 125, 155, 224
CviQI GTAC 2 cut(s) 205, 234
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 123
EagI CGGCCG 1 cut(s) 123
EclXI CGGCCG 1 cut(s) 123
Eco52I CGGCCG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 67
FaiI YATR 9 cut(s) 6, 24, 33, 65, 133, 170, 230, 232, 268
FatI CATG 2 cut(s) 4, 63
FauI CCCGC 1 cut(s) 99
FauNDI CATATG 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 123, 145
Fsp4HI GCNGC 2 cut(s) 123, 145
FspBI CTAG 2 cut(s) 60, 156
GluI GCNGC 2 cut(s) 123, 145
HaeIII GGCC 1 cut(s) 125
HapII CCGG 2 cut(s) 119, 126
HgaI GACGC 1 cut(s) 148
Hin1II CATG 2 cut(s) 8, 67
HpaII CCGG 2 cut(s) 119, 126
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 161
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 2 cut(s) 8, 67
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 111, 152, 245
LpnPI CCDG 5 cut(s) 68, 132, 139, 193, 196
MaeI CTAG 2 cut(s) 60, 156
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 27, 207
MnlI CCTC 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 118
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 2 cut(s) 119, 126
MwoI GCNNNNNNNGC 2 cut(s) 141, 161
NaeI GCCGGC 1 cut(s) 120
NdeI CATATG 1 cut(s) 230
NdeII GATC 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 118
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 2 cut(s) 8, 67
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
NspV TTCGAA 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 136
PdiI GCCGGC 1 cut(s) 120
PkrI GCNGC 2 cut(s) 124, 146
Ppu21I YACGTR 1 cut(s) 196
PspXI VCTCGAGB 1 cut(s) 136
RsaI GTAC 2 cut(s) 206, 235
RsaNI GTAC 2 cut(s) 205, 234
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 2 cut(s) 123, 145
Sau3AI GATC 1 cut(s) 88
SetI ASST 3 cut(s) 143, 157, 198
Sfr274I CTCGAG 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
SsiI CCGC 6 cut(s) 106, 122, 144, 147, 177, 243
SspMI CTAG 2 cut(s) 60, 156
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 53, 137, 218
TatI WGTACW 2 cut(s) 204, 233
TauI GCSGC 2 cut(s) 125, 147
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TspDTI ATGAA 1 cut(s) 185
XceI RCATGY 1 cut(s) 8
XhoI CTCGAG 1 cut(s) 136
XspI CTAG 2 cut(s) 60, 156
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.