Rw2G046460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018280
Physical Location & Seq
Reverse (-)
73713130 .. 73713697
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046460.1

Sequence Viewer

Length: 207 bp
ATGGTGGTGTTTTGCTTTCTGGTGGATCAGACGAAGCAAGTGCGGGGGAGCAAGCCGGCGGCCGGAATATGCTCGCGGTGCGGCGGTGGAGCTAGCGTCGCTGATATGAAAACCGCCACCAGATTTTGTTACGTGCCGTTGTACTGGAAGTCTTCGAAAGCCATCATATGTACTTTCTGCGGAGCAGTACTTAAATCTTACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.31

Weight (kDa)

9.38

Isoelectric Point (pI)

21.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20835
malus_domestica MD09G1091900.v1.1 MD17G1081800.v1.1
prunus_persica Prupe.3G233100_v2.0.a1
pyrus_communis pycom09g01740 pycom17g08000
rosa_chinensis RchiOBHm_Chr2g0162101
rosa_roxburghii Rroxscaffold_2G00088300
rosa_samantha Rh2DG584200
rosa_wichuraiana Rw2G046460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 76
AciI CCGC 7 cut(s) 43, 59, 76, 81, 84, 114, 180
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 60
AfaI GTAC 3 cut(s) 143, 172, 189
AfiI CCNNNNNNNGG 1 cut(s) 62
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
AlwI GGATC 1 cut(s) 33
AoxI GGCC 1 cut(s) 60
AsuII TTCGAA 1 cut(s) 155
AsuNHI GCTAGC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 144
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BfaI CTAG 1 cut(s) 93
BisI GCNGC 2 cut(s) 60, 82
BlsI GCNGC 2 cut(s) 61, 83
BmcAI AGTACT 1 cut(s) 189
BmtI GCTAGC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 149
BseX3I CGGCCG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 76
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 56, 63
BslI CCNNNNNNNGG 1 cut(s) 62
BsnI GGCC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 155
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 7 cut(s) 43, 59, 76, 81, 84, 114, 180
BspANI GGCC 1 cut(s) 62
BspFNI CGCG 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 4 cut(s) 53, 57, 74, 94
BstFNI CGCG 1 cut(s) 76
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 78, 98
BstUI CGCG 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 144
BstZI CGGCCG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 62
Cac8I GCNNGC 4 cut(s) 53, 57, 74, 94
Cfr10I RCCGGY 1 cut(s) 55
CseI GACGC 1 cut(s) 85
Csp6I GTAC 3 cut(s) 142, 171, 188
CviJI RGCY 4 cut(s) 55, 62, 92, 161
CviKI_1 RGCY 4 cut(s) 55, 62, 92, 161
CviQI GTAC 3 cut(s) 142, 171, 188
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 60
EagI CGGCCG 1 cut(s) 60
EclXI CGGCCG 1 cut(s) 60
Eco52I CGGCCG 1 cut(s) 60
FaiI YATR 5 cut(s) 70, 107, 167, 169, 205
FauI CCCGC 1 cut(s) 36
FauNDI CATATG 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 60, 82
Fsp4HI GCNGC 2 cut(s) 60, 82
FspBI CTAG 1 cut(s) 93
GluI GCNGC 2 cut(s) 60, 82
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 56, 63
HgaI GACGC 1 cut(s) 85
HpaII CCGG 2 cut(s) 56, 63
Hpy188I TCNGA 1 cut(s) 30
Hpy99I CGWCG 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 98
HpySE526I ACGT 1 cut(s) 132
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 3 cut(s) 48, 89, 182
LpnPI CCDG 5 cut(s) 5, 69, 76, 130, 133
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 144
MroNI GCCGGC 1 cut(s) 55
MseI TTAA 1 cut(s) 192
MspI CCGG 2 cut(s) 56, 63
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 78, 98
NaeI GCCGGC 1 cut(s) 57
NdeI CATATG 1 cut(s) 167
NdeII GATC 1 cut(s) 25
NgoMIV GCCGGC 1 cut(s) 55
NheI GCTAGC 1 cut(s) 92
NspV TTCGAA 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 61, 83
Ppu21I YACGTR 1 cut(s) 133
RsaI GTAC 3 cut(s) 143, 172, 189
RsaNI GTAC 3 cut(s) 142, 171, 188
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 60, 82
Sau3AI GATC 1 cut(s) 25
ScaI AGTACT 1 cut(s) 189
SetI ASST 2 cut(s) 94, 135
SfuI TTCGAA 1 cut(s) 155
SsiI CCGC 7 cut(s) 43, 59, 76, 81, 84, 114, 180
SspMI CTAG 1 cut(s) 93
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 155
TatI WGTACW 3 cut(s) 141, 170, 187
TauI GCSGC 2 cut(s) 62, 84
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 122
XspI CTAG 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.