Rh2DG584200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018280
Physical Location & Seq
Reverse (-)
81528497 .. 81538663
10167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG584200.1

Sequence Viewer

Length: 282 bp
ATGGTGGCGTTTTGCTTTCTGGTGGATCAGACGAAGCAAGTGCGGGGGAGCAAGCCGGCGGCCGGAATATGCTCGCGGTGCGGCGGTGGAGCTAGCGTCGCTGATATGAAAACCGCCACCAGATTTTGTTACGTGCCGTTGTACTGGAAGTCTTCGAAAGCCATCATATGTACTTTCTGCGGAGCAGTGATGATGCAGGTGGCGAATGGGGAGGGCAGTGTAGGGGGGGATGCCGCAGAGGAAGATGCTGAGGGAAGGAGAGTCTCCGACCACCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.8

Weight (kDa)

7.57

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20835
malus_domestica MD09G1091900.v1.1 MD17G1081800.v1.1
prunus_persica Prupe.3G233100_v2.0.a1
pyrus_communis pycom09g01740 pycom17g08000
rosa_chinensis RchiOBHm_Chr2g0162101
rosa_roxburghii Rroxscaffold_2G00088300
rosa_samantha Rh2DG584200
rosa_wichuraiana Rw2G046460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AccII CGCG 1 cut(s) 76
AciI CCGC 8 cut(s) 43, 59, 76, 81, 84, 114, 180, 234
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 60
AfaI GTAC 2 cut(s) 143, 172
AfiI CCNNNNNNNGG 1 cut(s) 62
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 33
AoxI GGCC 1 cut(s) 60
AsuII TTCGAA 1 cut(s) 155
AsuNHI GCTAGC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 249
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 2 cut(s) 93, 280
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 3 cut(s) 60, 82, 234
BlsI GCNGC 3 cut(s) 61, 83, 235
BmsI GCATC 3 cut(s) 183, 220, 235
BmtI GCTAGC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 249
Bpu14I TTCGAA 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 149
BseX3I CGGCCG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 76
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 56, 63
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 155
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 8 cut(s) 43, 59, 76, 81, 84, 114, 180, 234
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 187
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 4 cut(s) 53, 57, 74, 94
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 1 cut(s) 76
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 25
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 78, 98
BstUI CGCG 1 cut(s) 76
BstV2I GAAGAC 1 cut(s) 144
BstZI CGGCCG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 2 cut(s) 192, 223
BtsIMutI CAGTG 2 cut(s) 192, 223
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 4 cut(s) 53, 57, 74, 94
Cfr10I RCCGGY 1 cut(s) 55
CseI GACGC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 142, 171
CviJI RGCY 4 cut(s) 55, 62, 92, 161
CviKI_1 RGCY 4 cut(s) 55, 62, 92, 161
CviQI GTAC 2 cut(s) 142, 171
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 60
EagI CGGCCG 1 cut(s) 60
EclXI CGGCCG 1 cut(s) 60
Eco52I CGGCCG 1 cut(s) 60
FaiI YATR 4 cut(s) 70, 107, 167, 169
FauI CCCGC 1 cut(s) 36
FauNDI CATATG 1 cut(s) 167
Fnu4HI GCNGC 3 cut(s) 60, 82, 234
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 3 cut(s) 60, 82, 234
FspBI CTAG 2 cut(s) 93, 280
GluI GCNGC 3 cut(s) 60, 82, 234
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 56, 63
HgaI GACGC 1 cut(s) 85
HinfI GANTC 1 cut(s) 261
HpaII CCGG 2 cut(s) 56, 63
Hpy188I TCNGA 2 cut(s) 30, 268
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 98
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 132
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 3 cut(s) 48, 89, 182
LpnPI CCDG 6 cut(s) 5, 69, 76, 130, 133, 182
LweI GCATC 3 cut(s) 183, 220, 235
MaeI CTAG 2 cut(s) 93, 280
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 144, 254
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 3 cut(s) 205, 232, 244
MroNI GCCGGC 1 cut(s) 55
MspI CCGG 2 cut(s) 56, 63
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 78, 98
NaeI GCCGGC 1 cut(s) 57
NdeI CATATG 1 cut(s) 167
NdeII GATC 1 cut(s) 25
NgoMIV GCCGGC 1 cut(s) 55
NheI GCTAGC 1 cut(s) 92
NspV TTCGAA 1 cut(s) 155
PaqCI CACCTGC 1 cut(s) 187
PdiI GCCGGC 1 cut(s) 57
PkrI GCNGC 3 cut(s) 61, 83, 235
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 133
RsaI GTAC 2 cut(s) 143, 172
RsaNI GTAC 2 cut(s) 142, 171
SatI GCNGC 3 cut(s) 60, 82, 234
Sau3AI GATC 1 cut(s) 25
SchI GAGTC 1 cut(s) 270
SetI ASST 3 cut(s) 94, 135, 201
SfaNI GCATC 3 cut(s) 183, 220, 235
SfuI TTCGAA 1 cut(s) 155
SsiI CCGC 8 cut(s) 43, 59, 76, 81, 84, 114, 180, 234
SspMI CTAG 2 cut(s) 93, 280
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 155
TatI WGTACW 2 cut(s) 141, 170
TauI GCSGC 3 cut(s) 62, 84, 236
TscAI CASTG 2 cut(s) 192, 223
TspDTI ATGAA 1 cut(s) 122
TspRI CASTG 2 cut(s) 192, 223
XspI CTAG 2 cut(s) 93, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.