pycom17g10500

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0021101
Physical Location & Seq
Reverse (-)
8092740 .. 8093812
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 594 bp
ATGCTGCTGACGTGTAGATATCCTAATCCACATCATCTTCAACTCCCCGTTATAACATCCCTGCCCTCTCCAAAGTTCAAAGCATCACAGCAGGCTTGCTCAACACCACCAATACTTCAAACAGAAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACTGTTTTGAAGCAGTCGAATGAGCTCGTCCGAAAGATCGGCGGCCTCGGTGGCAGCCGCTTCTCCATGCGGCGCACCGTCAAAAGTGCTCCCCAGAGCATATGGTACGGCCCAGACCGGCCGAAGTACTTGGGACCATTCTCCGAGCAAACTCCATCATACTTGACCGGTGAATTCCCCGGTGACTACGGATGGGACACTGCTGGACTATCTGCAGACCCCGAGACATTTGCCAAGAACCGCGAGCTTGAGGTCGATCCACTCCAGATGGGCCATGCTTGGTGCACTGGGATGCGTCTTCCCGGAAATCTTGTCAAAGAATGGTGTCAAGTTCGGCGAGGCTGTTTGGTTCAAGGCTGGATCTCAAATCTTCTCCGAGGGCGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009503 GO:0009507 GO:0009517 GO:0009521 GO:0009522 GO:0009523 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010119 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019222 GO:0019684 GO:0019904 GO:0030076 GO:0030104 GO:0031090 GO:0031323 GO:0031325 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032870 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042592 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055035 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090333 GO:0097159 GO:0097305 GO:0097306 GO:0098588 GO:0098796 GO:0098805 GO:0098807 GO:1901363 GO:1901700 GO:1901701 GO:1903426 GO:1903428 GO:2000377 GO:2000379
KEGG Pathways
Metabolic & Signaling
ko00196 ko01100 map00196 map01100
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

198

Amino Acids

21.99

Weight (kDa)

9.88

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 120 - 153 1.4e-07 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021101)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g41001
pyrus_communis pycom17g10500
rosa_multiflora Rmu_sc0036638.1_g000001
rosa_samantha Rh2CG505300 Rh2CG505500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 53
AccII CGCG 1 cut(s) 447
AciI CCGC 5 cut(s) 246, 262, 274, 445, 586
AclWI GGATC 2 cut(s) 455, 572
AcoI YGGCCR 2 cut(s) 199, 323
AcsI RAATTY 1 cut(s) 377
AfaI GTAC 2 cut(s) 311, 332
AflIII ACRYGT 1 cut(s) 11
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 5 cut(s) 41, 79, 119, 214, 557
AjiI CACGTC 1 cut(s) 12
AluBI AGCT 2 cut(s) 229, 451
AluI AGCT 2 cut(s) 229, 451
Alw21I GWGCWC 3 cut(s) 231, 295, 491
Alw26I GTCTC 1 cut(s) 422
Alw44I GTGCAC 1 cut(s) 487
AlwI GGATC 2 cut(s) 455, 572
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 7 cut(s) 159, 199, 247, 313, 323, 475, 587
ApaLI GTGCAC 1 cut(s) 487
ApeKI GCWGC 2 cut(s) 4, 258
ApoI RAATTY 1 cut(s) 377
AsiGI ACCGGT 1 cut(s) 371
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 3 cut(s) 314, 338, 475
AsuC2I CCSGG 2 cut(s) 384, 507
AsuHPI GGTGA 2 cut(s) 386, 398
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 491
BalI TGGCCA 1 cut(s) 201
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 3 cut(s) 231, 295, 491
BbvI GCAGC 1 cut(s) 270
BccI CCATC 3 cut(s) 367, 390, 466
BceAI ACGGC 1 cut(s) 328
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BcnI CCSGG 2 cut(s) 384, 507
BcoDI GTCTC 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 417
BglI GCCNNNNNGGC 1 cut(s) 255
BisI GCNGC 6 cut(s) 5, 247, 259, 262, 275, 587
BlsI GCNGC 6 cut(s) 6, 248, 260, 263, 276, 588
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 384, 507
Bme18I GGWCC 1 cut(s) 338
BmeT110I CYCGRG 1 cut(s) 425
BmgBI CACGTC 1 cut(s) 12
BmgT120I GGNCC 3 cut(s) 314, 338, 475
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 384, 507
BmrI ACTGGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 92, 486
BmuI ACTGGG 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 2 cut(s) 384, 507
BsaJI CCNNGG 4 cut(s) 162, 250, 382, 580
BsaWI WCCGGW 1 cut(s) 371
Bse118I RCCGGY 2 cut(s) 321, 371
Bse1I ACTGG 1 cut(s) 496
BseDI CCNNGG 4 cut(s) 162, 250, 382, 580
BseGI GGATG 3 cut(s) 56, 401, 501
BseNI ACTGG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 491
BseX3I CGGCCG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 326
BshFI GGCC 7 cut(s) 161, 201, 249, 315, 325, 477, 589
BshTI ACCGGT 1 cut(s) 371
BsiEI CGRYCG 1 cut(s) 326
BsiHKAI GWGCWC 3 cut(s) 231, 295, 491
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 4 cut(s) 322, 372, 384, 507
BslFI GGGAC 2 cut(s) 351, 413
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 351, 413
BsnI GGCC 7 cut(s) 161, 201, 249, 315, 325, 477, 589
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 3 cut(s) 231, 295, 491
Bsp143I GATC 3 cut(s) 240, 460, 564
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 5 cut(s) 246, 262, 274, 445, 586
BspANI GGCC 7 cut(s) 161, 201, 249, 315, 325, 477, 589
BspFNI CGCG 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 2 cut(s) 455, 572
BsrFI RCCGGY 2 cut(s) 321, 371
BsrI ACTGG 1 cut(s) 496
BssAI RCCGGY 2 cut(s) 321, 371
BssECI CCNNGG 4 cut(s) 162, 250, 382, 580
BssMI GATC 3 cut(s) 240, 460, 564
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 208, 283
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 4 cut(s) 93, 97, 199, 449
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 3 cut(s) 56, 401, 501
BstFNI CGCG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 3 cut(s) 243, 463, 567
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 3 cut(s) 240, 460, 564
BstMCI CGRYCG 1 cut(s) 326
BstMWI GCNNNNNNNGC 2 cut(s) 173, 255
BstSCI CCNGG 2 cut(s) 382, 505
BstSFI CTRYAG 1 cut(s) 417
BstSLI GKGCMC 1 cut(s) 491
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
BstZI CGGCCG 1 cut(s) 323
BsuRI GGCC 7 cut(s) 161, 201, 249, 315, 325, 477, 589
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 12
BtsCI GGATG 3 cut(s) 56, 401, 501
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 402, 489
Cac8I GCNNGC 4 cut(s) 93, 97, 199, 449
CfoI GCGC 1 cut(s) 279
Cfr10I RCCGGY 2 cut(s) 321, 371
Cfr13I GGNCC 3 cut(s) 314, 338, 475
CseI GACGC 1 cut(s) 488
Csp6I GTAC 2 cut(s) 310, 331
CspAI ACCGGT 1 cut(s) 371
CviAII CATG 3 cut(s) 163, 271, 479
CviQI GTAC 2 cut(s) 310, 331
DpnI GATC 3 cut(s) 242, 462, 566
DpnII GATC 3 cut(s) 240, 460, 564
EaeI YGGCCR 2 cut(s) 199, 323
EagI CGGCCG 1 cut(s) 323
Ecl136II GAGCTC 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 338
Eco52I CGGCCG 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 377
EcoRV GATATC 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 166, 274, 482
FaiI YATR 7 cut(s) 53, 164, 272, 305, 307, 364, 480
FaqI GGGAC 2 cut(s) 351, 413
FatI CATG 3 cut(s) 162, 270, 478
FauNDI CATATG 1 cut(s) 305
Fnu4HI GCNGC 6 cut(s) 5, 247, 259, 262, 275, 587
FokI GGATG 3 cut(s) 43, 408, 508
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 6 cut(s) 5, 247, 259, 262, 275, 587
GlaI GCGC 1 cut(s) 278
GluI GCNGC 6 cut(s) 5, 247, 259, 262, 275, 587
GsuI CTGGAG 1 cut(s) 452
HaeIII GGCC 7 cut(s) 161, 201, 249, 315, 325, 477, 589
HapII CCGG 4 cut(s) 322, 372, 384, 507
HgaI GACGC 1 cut(s) 488
HhaI GCGC 1 cut(s) 279
Hin1II CATG 3 cut(s) 166, 274, 482
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HpaII CCGG 4 cut(s) 322, 372, 384, 507
HphI GGTGA 2 cut(s) 386, 398
Hpy166II GTNNAC 1 cut(s) 489
Hpy188I TCNGA 3 cut(s) 236, 349, 581
Hpy188III TCNNGA 1 cut(s) 469
Hpy8I GTNNAC 1 cut(s) 489
HpyCH4III ACNGT 2 cut(s) 208, 283
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 419, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 255
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 3 cut(s) 166, 274, 482
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 3 cut(s) 240, 460, 564
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 2 cut(s) 92, 486
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 242, 462, 566
MboI GATC 3 cut(s) 240, 460, 564
MboII GAAGA 3 cut(s) 29, 494, 566
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 3 cut(s) 231, 295, 491
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 1 cut(s) 377
MluNI TGGCCA 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 6 cut(s) 76, 181, 260, 448, 536, 575
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 494
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 4 cut(s) 322, 372, 384, 507
MspR9I CCNGG 2 cut(s) 384, 507
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 173, 255
NciI CCSGG 2 cut(s) 384, 507
NcoI CCATGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 305
NdeII GATC 3 cut(s) 240, 460, 564
NlaIII CATG 3 cut(s) 166, 274, 482
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 505
PinAI ACCGGT 1 cut(s) 371
PkrI GCNGC 6 cut(s) 6, 248, 260, 263, 276, 588
PsiI TTATAA 1 cut(s) 53
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 3 cut(s) 314, 338, 475
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 564
RsaI GTAC 2 cut(s) 311, 332
RsaNI GTAC 2 cut(s) 310, 331
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 6 cut(s) 5, 247, 259, 262, 275, 587
Sau3AI GATC 3 cut(s) 240, 460, 564
Sau96I GGNCC 3 cut(s) 314, 338, 475
ScaI AGTACT 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 384, 507
SduI GDGCHC 3 cut(s) 231, 295, 491
SetI ASST 5 cut(s) 14, 173, 231, 453, 459
SfaNI GCATC 2 cut(s) 92, 486
SfcI CTRYAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 1 cut(s) 377
SsiI CCGC 5 cut(s) 246, 262, 274, 445, 586
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 382, 505
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 208, 283
TaiI ACGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 221, 459
TasI AATT 1 cut(s) 377
TatI WGTACW 1 cut(s) 330
TauI GCSGC 4 cut(s) 249, 264, 277, 589
TscAI CASTG 2 cut(s) 409, 496
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 2 cut(s) 4, 258
Tsp45I GTSAC 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 2 cut(s) 409, 496
VneI GTGCAC 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.