pycom17g10730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0017101
Physical Location & Seq
Forward (+)
8316892 .. 8317772
881 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 744 bp
ATGAAGGAAAACATTTGCAGCTCTGTTTCAATCGTACGATCCGATTTGAACGTATTCGTGCACCATCCTAACGTTTTCGGAAAACGCTTGGAGTTTTTTTTCTCAGAAACCATGGATTATATCAAGATTTCAAGCATCCAATCCGCAAGCCAATTCAATTTCAACCAATCCCGCAAAGTGATCAAGTTTTTGTTCTCAGTCTCAGTGTTTTCAGCCTTACTCTCCTACTCTTCTTTGATCTCTTTTTTTCTCCACTCCTTCAATTCCTTCACATCTTCTGTAAACTTGTTCAGCTACACTTTGGATAAGAACTACATGTTTTTACTTTGCAATGGACTTGTGGTGTTCATTGTGAAGAACTCTGGTCTCATTGGGACTTCTCCACCAGGGAGCTCTAATCTCAACAATGAAGAACATGTTCCCAAGAGTATCGAATCCCGGCAAAAAGCAGCTGAATTGGCAGAAACTAAGGCAACAAAAGCACCAAAACCAAAGGAAGAAGTTGTCAACGTCGAAATCGAGCAAGTGAAAGTGAGAGAAGATGGAAAAAGGGTTTTCATTACAGTAAAGGAAGAAGATGAATGCTGCAGAAACAATTTTGTTGGGGTGGACGATCATGATTTGTATGAAGAGGAAGGGAATGAAGTGCTGAGTGCAGAGGAGTTGAACAAGAAGTGTGATGATTTTATTAGGAGAATGAAAGAAGGAATAAAACTTCCAGTCCAACAGTCAATCATGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

28.1

Weight (kDa)

5.82

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04495 AT2G04515
fragaria_vesca FvH4_6g40700
prunus_persica Prupe.3G198500_v2.0.a1
pyrus_communis pycom09g05040 pycom17g10730
rosa_laevigata RLG00000020890
rosa_roxburghii Rroxscaffold_2G00093210
rosa_rugosa Rorug02G0451900
rosa_samantha Rh2BG529800 Rh2CG503500 Rh2DG538900
rosa_wichuraiana Rw2G042700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 144, 172
AclI AACGTT 1 cut(s) 72
AclWI GGATC 1 cut(s) 33
AfaI GTAC 1 cut(s) 36
AflIII ACRYGT 2 cut(s) 315, 415
AgsI TTSAA 7 cut(s) 30, 49, 132, 157, 163, 262, 667
AjnI CCWGG 1 cut(s) 385
AluBI AGCT 4 cut(s) 21, 294, 393, 452
AluI AGCT 4 cut(s) 21, 294, 393, 452
Alw21I GWGCWC 2 cut(s) 63, 395
Alw26I GTCTC 2 cut(s) 205, 371
Alw44I GTGCAC 1 cut(s) 59
AlwI GGATC 1 cut(s) 33
ApaLI GTGCAC 1 cut(s) 59
ApeKI GCWGC 3 cut(s) 18, 449, 585
Asp700I GAANNNNTTC 2 cut(s) 53, 417
AsuC2I CCSGG 1 cut(s) 439
BaeGI GKGCMC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 395
Bbv12I GWGCWC 2 cut(s) 63, 395
BbvI GCAGC 3 cut(s) 30, 461, 572
BccI CCATC 2 cut(s) 72, 536
BciT130I CCWGG 1 cut(s) 387
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 205, 371
BfmI CTRYAG 1 cut(s) 586
BisI GCNGC 3 cut(s) 19, 450, 586
BlsI GCNGC 3 cut(s) 20, 451, 587
Bme1390I CCNGG 2 cut(s) 387, 439
BmrFI CCNGG 2 cut(s) 387, 439
BmsI GCATC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 111, 386
Bse1I ACTGG 1 cut(s) 719
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 111, 386
BseGI GGATG 2 cut(s) 64, 135
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 4 cut(s) 117, 210, 216, 641
BseNI ACTGG 1 cut(s) 719
BseRI GAGGAG 1 cut(s) 674
BseSI GKGCMC 1 cut(s) 63
BseXI GCAGC 3 cut(s) 30, 461, 572
BsgI GTGCAG 1 cut(s) 675
BsiHKAI GWGCWC 2 cut(s) 63, 395
BsiSI CCGG 1 cut(s) 439
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 388
BsmAI GTCTC 2 cut(s) 205, 371
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 1 cut(s) 587
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 63, 395
Bsp143I GATC 4 cut(s) 38, 180, 237, 613
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 2 cut(s) 144, 172
BspCNI CTCAG 4 cut(s) 116, 209, 215, 642
BspHI TCATGA 1 cut(s) 616
BspMAI CTGCAG 1 cut(s) 590
BspPI GGATC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 337
BsrI ACTGG 1 cut(s) 719
BssECI CCNNGG 2 cut(s) 111, 386
BssMI GATC 4 cut(s) 38, 180, 237, 613
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 565, 729
Bst6I CTCTTC 2 cut(s) 235, 624
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 5 cut(s) 103, 196, 202, 468, 650
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 64, 135
BstKTI GATC 4 cut(s) 41, 183, 240, 616
BstMAI GTCTC 2 cut(s) 205, 371
BstMBI GATC 4 cut(s) 38, 180, 237, 613
BstMWI GCNNNNNNNGC 2 cut(s) 458, 479
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 2 cut(s) 319, 419
BstSCI CCNGG 2 cut(s) 385, 437
BstSFI CTRYAG 1 cut(s) 586
BstSLI GKGCMC 1 cut(s) 63
BstV1I GCAGC 3 cut(s) 30, 461, 572
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 64, 135
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 148
CciI TCATGA 1 cut(s) 616
Csp6I GTAC 1 cut(s) 35
CviAII CATG 5 cut(s) 112, 316, 416, 617, 736
CviJI RGCY 6 cut(s) 21, 150, 215, 294, 393, 452
CviKI_1 RGCY 6 cut(s) 21, 150, 215, 294, 393, 452
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 5 cut(s) 103, 196, 202, 468, 650
DpnI GATC 4 cut(s) 40, 182, 239, 615
DpnII GATC 4 cut(s) 38, 180, 237, 613
Eam1104I CTCTTC 2 cut(s) 235, 624
EarI CTCTTC 2 cut(s) 235, 624
Ecl136II GAGCTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 393
EcoICRI GAGCTC 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 5 cut(s) 115, 319, 419, 620, 739
FaiI YATR 7 cut(s) 113, 120, 317, 417, 618, 627, 737
FaqI GGGAC 1 cut(s) 388
FatI CATG 5 cut(s) 111, 315, 415, 616, 735
FauI CCCGC 1 cut(s) 179
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 3 cut(s) 19, 450, 586
FokI GGATG 2 cut(s) 51, 122
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 3 cut(s) 19, 450, 586
GluI GCNGC 3 cut(s) 19, 450, 586
HapII CCGG 1 cut(s) 439
Hin1II CATG 5 cut(s) 115, 319, 419, 620, 739
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 1 cut(s) 434
HpaII CCGG 1 cut(s) 439
Hpy166II GTNNAC 4 cut(s) 61, 283, 508, 610
Hpy188I TCNGA 3 cut(s) 43, 80, 106
Hpy188III TCNNGA 2 cut(s) 124, 617
Hpy8I GTNNAC 4 cut(s) 61, 283, 508, 610
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 4 cut(s) 268, 277, 629, 698
HpyCH4III ACNGT 2 cut(s) 565, 729
HpyCH4IV ACGT 3 cut(s) 51, 72, 510
HpyCH4V TGCA 5 cut(s) 18, 61, 330, 588, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 479
HpyF3I CTNAG 5 cut(s) 103, 196, 202, 468, 650
HpySE526I ACGT 3 cut(s) 51, 72, 510
Hsp92II CATG 5 cut(s) 115, 319, 419, 620, 739
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 4 cut(s) 38, 180, 237, 613
LmnI GCTCC 1 cut(s) 390
LpnPI CCDG 5 cut(s) 348, 372, 399, 452, 732
Lsp1109I GCAGC 3 cut(s) 30, 461, 572
LweI GCATC 1 cut(s) 144
MaeII ACGT 3 cut(s) 51, 72, 510
MalI GATC 4 cut(s) 40, 182, 239, 615
MboI GATC 4 cut(s) 38, 180, 237, 613
MboII GAAGA 9 cut(s) 222, 267, 367, 422, 509, 551, 584, 587, 641
MhlI GDGCHC 2 cut(s) 63, 395
MluCI AATT 5 cut(s) 152, 157, 262, 455, 595
MnlI CCTC 2 cut(s) 625, 652
MroXI GAANNNNTTC 2 cut(s) 53, 417
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 2 cut(s) 387, 439
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 458, 479
NciI CCSGG 1 cut(s) 439
NcoI CCATGG 1 cut(s) 111
NdeII GATC 4 cut(s) 38, 180, 237, 613
NlaIII CATG 5 cut(s) 115, 319, 419, 620, 739
NspI RCATGY 2 cut(s) 319, 419
PagI TCATGA 1 cut(s) 616
PciI ACATGT 2 cut(s) 315, 415
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 516
PctI GAATGC 1 cut(s) 587
PdmI GAANNNNTTC 2 cut(s) 53, 417
PfeI GAWTC 1 cut(s) 434
Pfl23II CGTACG 1 cut(s) 34
PkrI GCNGC 3 cut(s) 20, 451, 587
PscI ACATGT 2 cut(s) 315, 415
Psp124BI GAGCTC 1 cut(s) 395
Psp1406I AACGTT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspLI CGTACG 1 cut(s) 34
PstI CTGCAG 1 cut(s) 590
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 395
SatI GCNGC 3 cut(s) 19, 450, 586
Sau3AI GATC 4 cut(s) 38, 180, 237, 613
ScrFI CCNGG 2 cut(s) 387, 439
SduI GDGCHC 2 cut(s) 63, 395
SetI ASST 7 cut(s) 23, 54, 75, 296, 395, 454, 513
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 1 cut(s) 586
Sse9I AATT 5 cut(s) 152, 157, 262, 455, 595
SsiI CCGC 2 cut(s) 144, 172
SstI GAGCTC 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 385, 437
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 565, 729
TaiI ACGT 3 cut(s) 54, 75, 513
TaqI TCGA 3 cut(s) 432, 513, 519
TasI AATT 5 cut(s) 152, 157, 262, 455, 595
TfiI GAWTC 1 cut(s) 434
TscAI CASTG 1 cut(s) 210
TseI GCWGC 3 cut(s) 18, 449, 585
TspDTI ATGAA 8 cut(s) 17, 337, 423, 547, 594, 642, 657, 713
TspRI CASTG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 59
XceI RCATGY 2 cut(s) 319, 419
XmnI GAANNNNTTC 2 cut(s) 53, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.