pycom17g10750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011172
Physical Location & Seq
Forward (+)
8336224 .. 8336953
730 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGGCCAACACAGAGCTCACTCTTCCCACAAATATGGCAGCCAAGTTGGCCCTCTTTTCTCCCACCACATTTCTAGCACCCTCCACCCCGTCGCCGCCACTATATCCTCCTTCTTTCACTTCCATTTCACACAAGAGGAGGCCACACAGTTTCAAGATTCATGCAGAATTAGGTGGTGGAGATGGAGAAGTCAATAAGGGATCAGGGAAGAAAAAATTCATAACCAGAGAACAAGAACCAGAGCAGTATTGGCAAACAGCAGGAGAAAGGGAAGGTGAAAATCCCATGATGACCCCCCTTCCATACATCATCATATTTGGCATGTCAACACCTTTTGTAATCTTGGCCATTGGTTTTGCTAATGGTTGGATTAAGGTACCTGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.22

Weight (kDa)

9.35

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05310 AT2G05310 AT4G13500
fragaria_vesca FvH4_6g40630 FvH4_6g40630
malus_domestica MD09G1126600.v1.1 MD17G1116900.v1.1
prunus_persica Prupe.3G197600_v2.0.a1
pyrus_communis pycom09g05080 pycom17g10750
rosa_chinensis RchiOBHm_Chr2g0156001
rosa_laevigata RLG00000020880
rosa_multiflora Rmu_sc0000260.1_g000024
rosa_roxburghii Rroxscaffold_2G00093300
rosa_rugosa Rorug02G0451100
rosa_samantha Rh2AG517900 Rh2BG529100 Rh2CG502600 Rh2DG538200
rosa_wichuraiana Rw2G042640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 376
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 208
AcoI YGGCCR 2 cut(s) 3, 345
AcsI RAATTY 1 cut(s) 215
AfaI GTAC 1 cut(s) 378
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 1 cut(s) 208
AoxI GGCC 4 cut(s) 3, 48, 140, 345
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 215
Asp718I GGTACC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 287
BalI TGGCCA 2 cut(s) 5, 347
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 176
BfaI CTAG 1 cut(s) 74
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 2 cut(s) 39, 95
BlsI GCNGC 2 cut(s) 40, 96
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 50
BshFI GGCC 4 cut(s) 5, 50, 142, 347
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 18
BsnI GGCC 4 cut(s) 5, 50, 142, 347
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 1 cut(s) 95
BspANI GGCC 4 cut(s) 5, 50, 142, 347
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 376
BssMI GATC 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 27
BstKTI GATC 1 cut(s) 203
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 2 cut(s) 47, 250
BstNSI RCATGY 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 34
BsuRI GGCC 4 cut(s) 5, 50, 142, 347
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 377
CviAII CATG 3 cut(s) 161, 286, 322
CviJI RGCY 6 cut(s) 5, 16, 41, 50, 142, 347
CviKI_1 RGCY 6 cut(s) 5, 16, 41, 50, 142, 347
CviQI GTAC 1 cut(s) 377
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
EaeI YGGCCR 2 cut(s) 3, 345
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 3 cut(s) 164, 289, 325
FaiI YATR 8 cut(s) 35, 103, 162, 221, 287, 304, 314, 323
FatI CATG 3 cut(s) 160, 285, 321
Fnu4HI GCNGC 2 cut(s) 39, 95
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 39, 95
FspBI CTAG 1 cut(s) 74
GluI GCNGC 2 cut(s) 39, 95
HaeIII GGCC 4 cut(s) 5, 50, 142, 347
Hin1II CATG 3 cut(s) 164, 289, 325
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 1 cut(s) 157
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 327
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 120, 266, 308
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 250
Hsp92II CATG 3 cut(s) 164, 289, 325
KpnI GGTACC 1 cut(s) 380
Kzo9I GATC 1 cut(s) 200
LpnPI CCDG 4 cut(s) 189, 238, 246, 252
Lsp1109I GCAGC 1 cut(s) 50
MaeI CTAG 1 cut(s) 74
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 2 cut(s) 14, 220
MhlI GDGCHC 1 cut(s) 18
MlsI TGGCCA 2 cut(s) 5, 347
MluCI AATT 2 cut(s) 167, 215
MluNI TGGCCA 2 cut(s) 5, 347
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 5 cut(s) 62, 91, 117, 129, 132
Mox20I TGGCCA 2 cut(s) 5, 347
MroXI GAANNNNTTC 1 cut(s) 215
MscI TGGCCA 2 cut(s) 5, 347
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 32
Msp20I TGGCCA 2 cut(s) 5, 347
MwoI GCNNNNNNNGC 2 cut(s) 47, 250
NdeII GATC 1 cut(s) 200
NlaIII CATG 3 cut(s) 164, 289, 325
NlaIV GGNNCC 1 cut(s) 378
NspI RCATGY 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 40, 96
Psp124BI GAGCTC 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 49
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 32
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 39, 95
Sau3AI GATC 1 cut(s) 200
Sau96I GGNCC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 18
SetI ASST 6 cut(s) 18, 175, 277, 334, 378, 382
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 2 cut(s) 167, 215
SsiI CCGC 1 cut(s) 95
SspMI CTAG 1 cut(s) 74
SstI GAGCTC 1 cut(s) 18
TaaI ACNGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 385
TasI AATT 2 cut(s) 167, 215
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 149, 208
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.