RchiOBHm_Chr2g0156001

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
72797362 .. 72798483
1122 bp
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UTR
Exon/CDS
Intron
PRQ52485

Sequence Viewer

Length: 351 bp
ATGGCAGCCAGGTTGACTCTCTTCTCTCCCACCACAACATTTCTAGGACCCTCAGGCCAATCACCACTATCTACTCTTTCTTTCACTTCCATTTCACCAAAGAGGAGAGCAAATAGTTTCAAGATTCAAGCAGATTTGGGTGGTGGAGATGCAGAAGCAAAGGGAGGAAAGAAAAAGTTTATAACTAGAGAACAAGAGCCAGAGCAGTACTGGCAAACAGCAGGAGAAAGAGAAGGAGAAAATCCCATGATGACCCCTCTTCCTTACATCATCATATTTGGCATGTCTACACCTTTTGTCATCTTAGCCATTGCTTTTGCTAATGGTTGGATTAAGGTGCCAGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.7

Weight (kDa)

9.69

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011172)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 287
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 2 cut(s) 121, 128
AjnI CCWGG 1 cut(s) 8
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 54, 87
AvaII GGWCC 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 52
BanI GGYRCC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 10
BfaI CTAG 2 cut(s) 44, 186
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 49, 339
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 215, 341
Bse21I CCTNAGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 215, 341
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 337
BsnI GGCC 1 cut(s) 57
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 49, 339
BspT107I GGYRCC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 2 cut(s) 215, 341
Bst2UI CCWGG 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 26, 264
BstDEI CTNAG 2 cut(s) 52, 304
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 17
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 208
CviAII CATG 2 cut(s) 247, 283
CviJI RGCY 4 cut(s) 8, 57, 199, 308
CviKI_1 RGCY 4 cut(s) 8, 57, 199, 308
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 52, 304
Eam1104I CTCTTC 2 cut(s) 26, 264
EarI CTCTTC 2 cut(s) 26, 264
Eco47I GGWCC 1 cut(s) 47
Eco81I CCTNAGG 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 250, 286
FaiI YATR 4 cut(s) 182, 248, 275, 284
FatI CATG 2 cut(s) 246, 282
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 44, 186
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 2 cut(s) 250, 286
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 2 cut(s) 16, 124
HphI GGTGA 2 cut(s) 54, 87
Hpy166II GTNNAC 2 cut(s) 15, 288
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 2 cut(s) 15, 288
HpyAV CCTTC 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 2 cut(s) 52, 304
Hsp92II CATG 2 cut(s) 250, 286
LpnPI CCDG 5 cut(s) 22, 39, 196, 207, 213
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 44, 186
MboII GAAGA 2 cut(s) 13, 251
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 4 cut(s) 61, 96, 158, 267
MseI TTAA 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 211
NlaIII CATG 2 cut(s) 250, 286
NlaIV GGNNCC 2 cut(s) 49, 339
NspI RCATGY 1 cut(s) 286
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 47
PsiI TTATAA 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 49, 339
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 209
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 10
SetI ASST 3 cut(s) 14, 295, 339
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 47
SspMI CTAG 2 cut(s) 44, 186
StyD4I CCNGG 1 cut(s) 8
TaqI TCGA 1 cut(s) 346
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseI GCWGC 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 47
XceI RCATGY 1 cut(s) 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 287
XspI CTAG 2 cut(s) 44, 186
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.