Rroxscaffold_2G00093300

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
14699423 .. 14700365
943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093300.1

Sequence Viewer

Length: 285 bp
ATGGCAGCCAGGTTGACTCTCTTCTCTCCCACCACAACATTTCTAGGACCCTCAGGCCAATCACCACTATCTACTCTTTCTTTCACTTCCATTTCACCAAAGAGGAGAGCAAACAGTTTCAAGATTCAAGCAGATTTGGGTACTGGCAAACAGCAGGAGAAAAGGGAAGGAGAAAATCCCATGATGACCCCTCTTCCTTACATTATCATATTTGGCATGTCTACACCTTTTGTCATCTTAGCCATTGCTTTTGCTAATGGTTGGATTAAGGTGCCAGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.27

Weight (kDa)

10.61

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011172)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 271
AccI GTMKAC 1 cut(s) 221
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 2 cut(s) 121, 128
AjnI CCWGG 1 cut(s) 8
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 54, 87
AvaII GGWCC 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 52
BanI GGYRCC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 10
BfaI CTAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 49, 273
BmrFI CCNGG 1 cut(s) 10
Bse1I ACTGG 2 cut(s) 148, 275
Bse21I CCTNAGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 148, 275
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 271
BsnI GGCC 1 cut(s) 57
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 49, 273
BspT107I GGYRCC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 2 cut(s) 148, 275
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 2 cut(s) 26, 198
BstDEI CTNAG 2 cut(s) 52, 238
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 17
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 141
CviAII CATG 2 cut(s) 181, 217
CviJI RGCY 3 cut(s) 8, 57, 242
CviKI_1 RGCY 3 cut(s) 8, 57, 242
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 2 cut(s) 52, 238
Eam1104I CTCTTC 2 cut(s) 26, 198
EarI CTCTTC 2 cut(s) 26, 198
Eco47I GGWCC 1 cut(s) 47
Eco81I CCTNAGG 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 184, 220
FaiI YATR 3 cut(s) 182, 209, 218
FatI CATG 2 cut(s) 180, 216
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 2 cut(s) 184, 220
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 2 cut(s) 16, 124
HphI GGTGA 2 cut(s) 54, 87
Hpy166II GTNNAC 2 cut(s) 15, 222
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 2 cut(s) 15, 222
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 52, 238
Hsp92II CATG 2 cut(s) 184, 220
LpnPI CCDG 4 cut(s) 22, 39, 129, 140
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 44
MboII GAAGA 2 cut(s) 13, 185
MlyI GAGTC 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 3 cut(s) 61, 96, 201
MseI TTAA 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
NlaIII CATG 2 cut(s) 184, 220
NlaIV GGNNCC 2 cut(s) 49, 273
NspI RCATGY 1 cut(s) 220
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 49, 273
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 10
SetI ASST 3 cut(s) 14, 229, 273
SinI GGWCC 1 cut(s) 47
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 280
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseI GCWGC 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 47
XceI RCATGY 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 221
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.