Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0024464

Physical Location & Seq

Genomic Coordinates Reverse (-)

10266474 .. 10268935

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g12520.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGATATAAATGGTCATTGTGACTCAAATAAAGGATGTAAGTTCAAGGAAGCTGAAGAAATATTTCAGACTCTTTTAAATGAGGAAAAATCACCTTTAAAGCCAGACCAAAACATGTTCCACATGATGATTTATATGTATAAGAAGGCGGGGAGCTATGACAAAACTCGTAAGATGTTTGCAGTGATGTCTGAGGGAGGTGTTCCACAATCGACGATCACTTATAATAGCTGGATATCATTTGAAAATAATACAAGGAAGTCTCCAAGATGTATAACCAGGCTTAACCCTTATCTTTGCTCTTATACGAGGATGCTATCAGCATATGTGAATGCATCTGACATGGAGGGTGCTGAGAAATTCTTCATAAGAATAATACAAGATGCATTTAAACCCAATGTCATCACTTATGGGACCTTAATCAAAGGGTATTATAAGACAAATATTATCGAGAAGATGATGGAGAAATATGAGGAAATGCTGAACAGAGATTTCGGCAGTGCTGTTGTTTGGTACCAGGAAATGGAATCCTGTAGGCTTCCGCCTGATCAGAAAGCAAAAAAATACCCTTTTCTCTGGCAAAAACAAGTTAGCAATGAACAAGGAACTAGTAAGTCTTTGGTGCCTGTTGATGAGAATGATAGTTACGATGAGTATGAAGAAGAGGACGATGAAATGTATGATGATGAATTAGAGTGTTCTTCACAAGTCACTTCATCAAATGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009310 GO:0009987 GO:0016491 GO:0016645 GO:0016647 GO:0034641 GO:0042402 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046592 GO:0055114 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00330 ko00410 map00330 map00410

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

244

Amino Acids

28.44

Weight (kDa)

4.83

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024464)

Species	Orthologous Gene IDs
malus_domestica	MD05G1251200.v1.1
pyrus_communis	pycom17g12520
rosa_multiflora	Rmu_sc0006887.1_g000012

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	225, 435
Acc65I	GGTACC	1 cut(s)	513
AccB1I	GGYRCC	2 cut(s)	513, 622
AccB7I	CCANNNNNTGG	1 cut(s)	523
AciI	CCGC	2 cut(s)	149, 542
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	2 cut(s)	46, 245
AhlI	ACTAGT	1 cut(s)	608
AjnI	CCWGG	2 cut(s)	278, 516
AluBI	AGCT	3 cut(s)	53, 156, 231
AluI	AGCT	3 cut(s)	53, 156, 231
Alw26I	GTCTC	1 cut(s)	267
ApoI	RAATTY	1 cut(s)	359
Asp700I	GAANNNNTTC	2 cut(s)	63, 362
Asp718I	GGTACC	1 cut(s)	513
AspS9I	GGNCC	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	414
BanI	GGYRCC	2 cut(s)	513, 622
BccI	CCATC	1 cut(s)	454
BciT130I	CCWGG	2 cut(s)	280, 518
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	267
BcuI	ACTAGT	1 cut(s)	608
BfaI	CTAG	1 cut(s)	609
BfmI	CTRYAG	1 cut(s)	532
Bme1390I	CCNGG	2 cut(s)	280, 518
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	414
BmiI	GGNNCC	3 cut(s)	415, 515, 624
BmrFI	CCNGG	2 cut(s)	280, 518
BmsI	GCATC	3 cut(s)	303, 344, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse3DI	GCAATG	1 cut(s)	601
BseBI	CCWGG	2 cut(s)	280, 518
BseGI	GGATG	2 cut(s)	41, 318
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	2 cut(s)	183, 345
BshNI	GGYRCC	2 cut(s)	513, 622
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	216, 547
BspACI	CCGC	2 cut(s)	149, 542
BspCNI	CTCAG	2 cut(s)	184, 346
BspLI	GGNNCC	3 cut(s)	415, 515, 624
BspT107I	GGYRCC	2 cut(s)	513, 622
BsrDI	GCAATG	1 cut(s)	601
BssMI	GATC	2 cut(s)	216, 547
Bst2UI	CCWGG	2 cut(s)	280, 518
Bst6I	CTCTTC	1 cut(s)	657
BstDEI	CTNAG	2 cut(s)	192, 354
BstF5I	GGATG	2 cut(s)	41, 318
BstKTI	GATC	2 cut(s)	219, 550
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	216, 547
BstNI	CCWGG	2 cut(s)	280, 518
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	278, 516
BstSFI	CTRYAG	1 cut(s)	532
BtsCI	GGATG	2 cut(s)	41, 318
BtsI	GCAGTG	2 cut(s)	189, 505
BtsIMutI	CAGTG	2 cut(s)	189, 505
Cfr13I	GGNCC	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	3 cut(s)	115, 124, 343
CviJI	RGCY	6 cut(s)	53, 103, 156, 231, 283, 538
CviKI_1	RGCY	6 cut(s)	53, 103, 156, 231, 283, 538
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	2 cut(s)	192, 354
DpnI	GATC	2 cut(s)	218, 549
DpnII	GATC	2 cut(s)	216, 547
DraI	TTTAAA	3 cut(s)	78, 99, 391
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
EciI	GGCGGA	1 cut(s)	531
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	278, 516
EcoRV	GATATC	1 cut(s)	237
EcoT22I	ATGCAT	2 cut(s)	337, 388
FaeI	CATG	3 cut(s)	118, 127, 346
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	3 cut(s)	114, 123, 342
FauI	CCCGC	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	547
FokI	GGATG	2 cut(s)	48, 325
FspBI	CTAG	1 cut(s)	609
Hin1II	CATG	3 cut(s)	118, 127, 346
HinfI	GANTC	3 cut(s)	23, 70, 527
HphI	GGTGA	1 cut(s)	84
Hpy188I	TCNGA	4 cut(s)	69, 193, 340, 552
Hpy188III	TCNNGA	1 cut(s)	451
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	182, 335, 386
HpyF3I	CTNAG	2 cut(s)	192, 354
Hsp92II	CATG	3 cut(s)	118, 127, 346
KpnI	GGTACC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	216, 547
LmnI	GCTCC	1 cut(s)	153
LweI	GCATC	3 cut(s)	303, 344, 373
MaeI	CTAG	1 cut(s)	609
MaeIII	GTNAC	3 cut(s)	20, 644, 709
MalI	GATC	2 cut(s)	218, 549
MboI	GATC	2 cut(s)	216, 547
MboII	GAAGA	6 cut(s)	68, 355, 466, 671, 674, 693
MluCI	AATT	2 cut(s)	359, 689
MlyI	GAGTC	2 cut(s)	17, 64
MnlI	CCTC	7 cut(s)	76, 187, 191, 303, 340, 466, 658
Mph1103I	ATGCAT	2 cut(s)	337, 388
MroXI	GAANNNNTTC	2 cut(s)	63, 362
MseI	TTAA	5 cut(s)	77, 98, 285, 390, 419
MspR9I	CCNGG	2 cut(s)	280, 518
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	2 cut(s)	280, 518
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	2 cut(s)	216, 547
NlaIII	CATG	3 cut(s)	118, 127, 346
NlaIV	GGNNCC	3 cut(s)	415, 515, 624
NmuCI	GTSAC	2 cut(s)	20, 709
NsiI	ATGCAT	2 cut(s)	337, 388
NspI	RCATGY	1 cut(s)	118
PciI	ACATGT	1 cut(s)	114
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	2 cut(s)	63, 362
PfeI	GAWTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	523
PleI	GAGTC	2 cut(s)	17, 64
PpsI	GAGTC	2 cut(s)	17, 64
PpuMI	RGGWCCY	1 cut(s)	414
PscI	ACATGT	1 cut(s)	114
PsiI	TTATAA	2 cut(s)	225, 435
Psp5II	RGGWCCY	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	278, 516
PspGI	CCWGG	2 cut(s)	278, 516
PspN4I	GGNNCC	3 cut(s)	415, 515, 624
PspPI	GGNCC	1 cut(s)	414
PspPPI	RGGWCCY	1 cut(s)	414
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SaqAI	TTAA	5 cut(s)	77, 98, 285, 390, 419
Sau3AI	GATC	2 cut(s)	216, 547
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	2 cut(s)	17, 64
ScrFI	CCNGG	2 cut(s)	280, 518
SetI	ASST	6 cut(s)	55, 97, 158, 202, 233, 419
SfaNI	GCATC	3 cut(s)	303, 344, 373
SfcI	CTRYAG	1 cut(s)	532
SinI	GGWCC	1 cut(s)	414
SpeI	ACTAGT	1 cut(s)	608
Sse9I	AATT	2 cut(s)	359, 689
SsiI	CCGC	2 cut(s)	149, 542
SspI	AATATT	2 cut(s)	63, 445
SspMI	CTAG	1 cut(s)	609
StyD4I	CCNGG	2 cut(s)	278, 516
TaqI	TCGA	2 cut(s)	212, 450
TasI	AATT	2 cut(s)	359, 689
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	5 cut(s)	77, 98, 285, 390, 419
Tru9I	TTAA	5 cut(s)	77, 98, 285, 390, 419
TscAI	CASTG	2 cut(s)	189, 505
TseFI	GTSAC	2 cut(s)	20, 709
Tsp45I	GTSAC	2 cut(s)	20, 709
TspDTI	ATGAA	6 cut(s)	355, 612, 672, 687, 702, 705
TspRI	CASTG	2 cut(s)	189, 505
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	2 cut(s)	63, 362
XspI	CTAG	1 cut(s)	609
Zsp2I	ATGCAT	2 cut(s)	337, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.