Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006887.1

Orthogroup ID

OG0024464

Physical Location & Seq

Genomic Coordinates Forward (+)

48499 .. 48932

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006887.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgaaagagaagggtatcagtccggacttagttgtgtatagcattcttattgacggtctctttaaggcagggaagttggaggaggggcatcgacttttttctgttgcattagatagtgggattaagttggatgtagtcatcttcagttctgttatggatgcatatgtaagaactagaaatttggaaaagctagtggaggagtacagaaggatgtataacgaagggatctcacagaacactgttagagttgatgggcagccatgggagtggagaagaggaagaaggagaacagaggaggaagaattgaagaaggagaacagaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

108

Amino Acids

12.69

Weight (kDa)

7.97

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024464)

Species	Orthologous Gene IDs
malus_domestica	MD05G1251200.v1.1
pyrus_communis	pycom17g12520
rosa_multiflora	Rmu_sc0006887.1_g000012

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	22
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	2 cut(s)	174, 191
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
BmsI	GCATC	2 cut(s)	97, 148
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	22
BseAI	TCCGGA	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	3 cut(s)	136, 163, 216
BseRI	GAGGAG	3 cut(s)	95, 212, 308
BseXI	GCAGC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	260
BspEI	TCCGGA	1 cut(s)	22
BspPI	GGATC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	56, 241
Bst6I	CTCTTC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	3 cut(s)	136, 163, 216
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	3 cut(s)	136, 163, 216
BtsIMutI	CAGTG	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	2 cut(s)	190, 259
CviKI_1	RGCY	2 cut(s)	190, 259
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	1 cut(s)	264
FaiI	YATR	6 cut(s)	39, 155, 163, 165, 216, 262
FatI	CATG	1 cut(s)	260
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	3 cut(s)	143, 170, 223
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	2 cut(s)	174, 191
GluI	GCNGC	1 cut(s)	257
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	1 cut(s)	264
HpaII	CCGG	1 cut(s)	23
Hpy188III	TCNNGA	1 cut(s)	23
HpyAV	CCTTC	5 cut(s)	4, 201, 215, 276, 304
HpyCH4III	ACNGT	2 cut(s)	56, 241
HpyCH4V	TGCA	2 cut(s)	107, 161
HpyF3I	CTNAG	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	2 cut(s)	36, 54
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	97, 148
MaeI	CTAG	2 cut(s)	174, 191
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	5 cut(s)	133, 285, 291, 311, 319
MflI	RGATCY	1 cut(s)	225
MluCI	AATT	3 cut(s)	178, 302, 322
MmeI	TCCRAC	2 cut(s)	57, 108
MnlI	CCTC	6 cut(s)	73, 76, 190, 269, 286, 289
Mph1103I	ATGCAT	1 cut(s)	163
MroI	TCCGGA	1 cut(s)	22
MseI	TTAA	2 cut(s)	63, 123
MslI	CAYNNNNRTG	1 cut(s)	265
MspI	CCGG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	163
PctI	GAATGC	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	63, 123
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	1 cut(s)	225
SetI	ASST	1 cut(s)	192
SfaNI	GCATC	2 cut(s)	97, 148
SgeI	CNNG	5 cut(s)	35, 81, 186, 203, 273
SmiMI	CAYNNNNRTG	1 cut(s)	265
Sse9I	AATT	3 cut(s)	178, 302, 322
SspMI	CTAG	2 cut(s)	174, 191
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	56, 241
TaqI	TCGA	1 cut(s)	91
TasI	AATT	3 cut(s)	178, 302, 322
TatI	WGTACW	1 cut(s)	201
Tru1I	TTAA	2 cut(s)	63, 123
Tru9I	TTAA	2 cut(s)	63, 123
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	178
XspI	CTAG	2 cut(s)	174, 191
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.