pycom17g12520

Polyamine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0024464
Physical Location & Seq
Reverse (-)
10266474 .. 10268935
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 732 bp
ATGGATATAAATGGTCATTGTGACTCAAATAAAGGATGTAAGTTCAAGGAAGCTGAAGAAATATTTCAGACTCTTTTAAATGAGGAAAAATCACCTTTAAAGCCAGACCAAAACATGTTCCACATGATGATTTATATGTATAAGAAGGCGGGGAGCTATGACAAAACTCGTAAGATGTTTGCAGTGATGTCTGAGGGAGGTGTTCCACAATCGACGATCACTTATAATAGCTGGATATCATTTGAAAATAATACAAGGAAGTCTCCAAGATGTATAACCAGGCTTAACCCTTATCTTTGCTCTTATACGAGGATGCTATCAGCATATGTGAATGCATCTGACATGGAGGGTGCTGAGAAATTCTTCATAAGAATAATACAAGATGCATTTAAACCCAATGTCATCACTTATGGGACCTTAATCAAAGGGTATTATAAGACAAATATTATCGAGAAGATGATGGAGAAATATGAGGAAATGCTGAACAGAGATTTCGGCAGTGCTGTTGTTTGGTACCAGGAAATGGAATCCTGTAGGCTTCCGCCTGATCAGAAAGCAAAAAAATACCCTTTTCTCTGGCAAAAACAAGTTAGCAATGAACAAGGAACTAGTAAGTCTTTGGTGCCTGTTGATGAGAATGATAGTTACGATGAGTATGAAGAAGAGGACGATGAAATGTATGATGATGAATTAGAGTGTTCTTCACAAGTCACTTCATCAAATGATGAGTGA

Protein Analysis

244

Amino Acids

28.44

Weight (kDa)

4.83

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 100 - 146 5.4e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024464)

Species Orthologous Gene IDs
malus_domestica MD05G1251200.v1.1
pyrus_communis pycom17g12520
rosa_multiflora Rmu_sc0006887.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 225, 435
Acc65I GGTACC 1 cut(s) 513
AccB1I GGYRCC 2 cut(s) 513, 622
AccB7I CCANNNNNTGG 1 cut(s) 523
AciI CCGC 2 cut(s) 149, 542
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 1 cut(s) 523
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 2 cut(s) 46, 245
AhlI ACTAGT 1 cut(s) 608
AjnI CCWGG 2 cut(s) 278, 516
AluBI AGCT 3 cut(s) 53, 156, 231
AluI AGCT 3 cut(s) 53, 156, 231
Alw26I GTCTC 1 cut(s) 267
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 2 cut(s) 63, 362
Asp718I GGTACC 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 414
BanI GGYRCC 2 cut(s) 513, 622
BccI CCATC 1 cut(s) 454
BciT130I CCWGG 2 cut(s) 280, 518
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 267
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 1 cut(s) 609
BfmI CTRYAG 1 cut(s) 532
Bme1390I CCNGG 2 cut(s) 280, 518
Bme18I GGWCC 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 3 cut(s) 415, 515, 624
BmrFI CCNGG 2 cut(s) 280, 518
BmsI GCATC 3 cut(s) 303, 344, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse3DI GCAATG 1 cut(s) 601
BseBI CCWGG 2 cut(s) 280, 518
BseGI GGATG 2 cut(s) 41, 318
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMI GCAATG 1 cut(s) 601
BseMII CTCAG 2 cut(s) 183, 345
BshNI GGYRCC 2 cut(s) 513, 622
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 427
BsmI GAATGC 1 cut(s) 337
Bsp143I GATC 2 cut(s) 216, 547
BspACI CCGC 2 cut(s) 149, 542
BspCNI CTCAG 2 cut(s) 184, 346
BspLI GGNNCC 3 cut(s) 415, 515, 624
BspT107I GGYRCC 2 cut(s) 513, 622
BsrDI GCAATG 1 cut(s) 601
BssMI GATC 2 cut(s) 216, 547
Bst2UI CCWGG 2 cut(s) 280, 518
Bst6I CTCTTC 1 cut(s) 657
BstDEI CTNAG 2 cut(s) 192, 354
BstF5I GGATG 2 cut(s) 41, 318
BstKTI GATC 2 cut(s) 219, 550
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 2 cut(s) 216, 547
BstNI CCWGG 2 cut(s) 280, 518
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 2 cut(s) 278, 516
BstSFI CTRYAG 1 cut(s) 532
BtsCI GGATG 2 cut(s) 41, 318
BtsI GCAGTG 2 cut(s) 189, 505
BtsIMutI CAGTG 2 cut(s) 189, 505
Cfr13I GGNCC 1 cut(s) 414
Csp6I GTAC 1 cut(s) 514
CviAII CATG 3 cut(s) 115, 124, 343
CviJI RGCY 6 cut(s) 53, 103, 156, 231, 283, 538
CviKI_1 RGCY 6 cut(s) 53, 103, 156, 231, 283, 538
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 2 cut(s) 192, 354
DpnI GATC 2 cut(s) 218, 549
DpnII GATC 2 cut(s) 216, 547
DraI TTTAAA 3 cut(s) 78, 99, 391
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
EciI GGCGGA 1 cut(s) 531
Eco32I GATATC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 278, 516
EcoRV GATATC 1 cut(s) 237
EcoT22I ATGCAT 2 cut(s) 337, 388
FaeI CATG 3 cut(s) 118, 127, 346
FaqI GGGAC 1 cut(s) 427
FatI CATG 3 cut(s) 114, 123, 342
FauI CCCGC 1 cut(s) 142
FauNDI CATATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 547
FokI GGATG 2 cut(s) 48, 325
FspBI CTAG 1 cut(s) 609
Hin1II CATG 3 cut(s) 118, 127, 346
HinfI GANTC 3 cut(s) 23, 70, 527
HphI GGTGA 1 cut(s) 84
Hpy188I TCNGA 4 cut(s) 69, 193, 340, 552
Hpy188III TCNNGA 1 cut(s) 451
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 3 cut(s) 182, 335, 386
HpyF3I CTNAG 2 cut(s) 192, 354
Hsp92II CATG 3 cut(s) 118, 127, 346
KpnI GGTACC 1 cut(s) 517
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 2 cut(s) 216, 547
LmnI GCTCC 1 cut(s) 153
LweI GCATC 3 cut(s) 303, 344, 373
MaeI CTAG 1 cut(s) 609
MaeIII GTNAC 3 cut(s) 20, 644, 709
MalI GATC 2 cut(s) 218, 549
MboI GATC 2 cut(s) 216, 547
MboII GAAGA 6 cut(s) 68, 355, 466, 671, 674, 693
MluCI AATT 2 cut(s) 359, 689
MlyI GAGTC 2 cut(s) 17, 64
MnlI CCTC 7 cut(s) 76, 187, 191, 303, 340, 466, 658
Mph1103I ATGCAT 2 cut(s) 337, 388
MroXI GAANNNNTTC 2 cut(s) 63, 362
MseI TTAA 5 cut(s) 77, 98, 285, 390, 419
MspR9I CCNGG 2 cut(s) 280, 518
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 280, 518
NdeI CATATG 1 cut(s) 325
NdeII GATC 2 cut(s) 216, 547
NlaIII CATG 3 cut(s) 118, 127, 346
NlaIV GGNNCC 3 cut(s) 415, 515, 624
NmuCI GTSAC 2 cut(s) 20, 709
NsiI ATGCAT 2 cut(s) 337, 388
NspI RCATGY 1 cut(s) 118
PciI ACATGT 1 cut(s) 114
PctI GAATGC 1 cut(s) 337
PdmI GAANNNNTTC 2 cut(s) 63, 362
PfeI GAWTC 1 cut(s) 527
PflMI CCANNNNNTGG 1 cut(s) 523
PleI GAGTC 2 cut(s) 17, 64
PpsI GAGTC 2 cut(s) 17, 64
PpuMI RGGWCCY 1 cut(s) 414
PscI ACATGT 1 cut(s) 114
PsiI TTATAA 2 cut(s) 225, 435
Psp5II RGGWCCY 1 cut(s) 414
Psp6I CCWGG 2 cut(s) 278, 516
PspGI CCWGG 2 cut(s) 278, 516
PspN4I GGNNCC 3 cut(s) 415, 515, 624
PspPI GGNCC 1 cut(s) 414
PspPPI RGGWCCY 1 cut(s) 414
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SaqAI TTAA 5 cut(s) 77, 98, 285, 390, 419
Sau3AI GATC 2 cut(s) 216, 547
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 2 cut(s) 17, 64
ScrFI CCNGG 2 cut(s) 280, 518
SetI ASST 6 cut(s) 55, 97, 158, 202, 233, 419
SfaNI GCATC 3 cut(s) 303, 344, 373
SfcI CTRYAG 1 cut(s) 532
SinI GGWCC 1 cut(s) 414
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 2 cut(s) 359, 689
SsiI CCGC 2 cut(s) 149, 542
SspI AATATT 2 cut(s) 63, 445
SspMI CTAG 1 cut(s) 609
StyD4I CCNGG 2 cut(s) 278, 516
TaqI TCGA 2 cut(s) 212, 450
TasI AATT 2 cut(s) 359, 689
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 5 cut(s) 77, 98, 285, 390, 419
Tru9I TTAA 5 cut(s) 77, 98, 285, 390, 419
TscAI CASTG 2 cut(s) 189, 505
TseFI GTSAC 2 cut(s) 20, 709
Tsp45I GTSAC 2 cut(s) 20, 709
TspDTI ATGAA 6 cut(s) 355, 612, 672, 687, 702, 705
TspRI CASTG 2 cut(s) 189, 505
Van91I CCANNNNNTGG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 1 cut(s) 359
XceI RCATGY 1 cut(s) 118
XmnI GAANNNNTTC 2 cut(s) 63, 362
XspI CTAG 1 cut(s) 609
Zsp2I ATGCAT 2 cut(s) 337, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.