Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0024443

Physical Location & Seq

Genomic Coordinates Forward (+)

10524758 .. 10525060

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g12820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCACGTTTTGTTTGCCTCAGCAATGGGATTTCCTTCAGACCCGAAGATCATCCAGGAGAGTGAAGAAAAGCTCGGCAAGGTGTTGGACATTTACGAGGAGAGGCTGTCGAAGAGCAAGTACTTGGCCGGTGATTTTTTCAGCCTTGATGATCTTAGCCACCTTTCGTTGACCCACTACTTGGTCAATAGTATGGGGAAGGAGTATATGATAAGGGACAGAAAGCATGTCTCTGCTTGGTGGGATGATATTAGCAGCAGACCATCCTGGAAGAAGGTCCTCGAGTTTGGTGCGCCGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

101

Amino Acids

11.6

Weight (kDa)

6.05

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	16 - 88	1.9e-11	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	21 - 93	2.7e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024443)

Species	Orthologous Gene IDs
malus_domestica	MD17G1133700.v1.1
pyrus_communis	pycom09g06770 pycom17g12820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	54, 266
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	277
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	56, 268
BcoDI	GTCTC	1 cut(s)	235
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	2 cut(s)	56, 268
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	277
BmrFI	CCNGG	2 cut(s)	56, 268
Bpu10I	CCTNAGC	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	2 cut(s)	56, 268
BseGI	GGATG	3 cut(s)	51, 250, 263
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	267
BshFI	GGCC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	48, 151
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	32
BspQI	GCTCTTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssMI	GATC	2 cut(s)	48, 151
Bst2UI	CCWGG	2 cut(s)	56, 268
Bst6I	CTCTTC	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	19, 155
BstF5I	GGATG	3 cut(s)	51, 250, 263
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	51, 154
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	2 cut(s)	48, 151
BstNI	CCWGG	2 cut(s)	56, 268
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	54, 266
BstV1I	GCAGC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	3 cut(s)	51, 250, 263
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	5 cut(s)	73, 106, 128, 144, 159
CviKI_1	RGCY	5 cut(s)	73, 106, 128, 144, 159
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	19, 155
DpnI	GATC	2 cut(s)	50, 153
DpnII	GATC	2 cut(s)	48, 151
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	54, 266
FaeI	CATG	1 cut(s)	230
FaiI	YATR	4 cut(s)	194, 207, 209, 228
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	3 cut(s)	38, 250, 257
Fsp4HI	GCNGC	1 cut(s)	256
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	3 cut(s)	45, 193, 268
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	19, 155
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	48, 151
LguI	GCTCTTC	1 cut(s)	107
LpnPI	CCDG	5 cut(s)	41, 68, 142, 253, 280
Lsp1109I	GCAGC	1 cut(s)	267
MaeII	ACGT	1 cut(s)	6
MalI	GATC	2 cut(s)	50, 153
MboI	GATC	2 cut(s)	48, 151
MboII	GAAGA	4 cut(s)	58, 77, 124, 283
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	4 cut(s)	28, 91, 96, 290
MseI	TTAA	1 cut(s)	301
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	56, 268
MvaI	CCWGG	2 cut(s)	56, 268
NdeII	GATC	2 cut(s)	48, 151
NlaIII	CATG	1 cut(s)	230
NmeAIII	GCCGAG	1 cut(s)	54
NspI	RCATGY	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	181
PfoI	TCCNGGA	2 cut(s)	54, 266
PkrI	GCNGC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	54, 266
PspGI	CCWGG	2 cut(s)	54, 266
PspPI	GGNCC	1 cut(s)	277
PspPPI	RGGWCCY	1 cut(s)	277
PspXI	VCTCGAGB	1 cut(s)	281
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	301
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	2 cut(s)	48, 151
Sau96I	GGNCC	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	56, 268
SetI	ASST	5 cut(s)	9, 75, 84, 165, 279
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	54, 266
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	110, 282
TatI	WGTACW	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	301
Tru9I	TTAA	1 cut(s)	301
TseI	GCWGC	1 cut(s)	255
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	277
XceI	RCATGY	1 cut(s)	230
XhoI	CTCGAG	1 cut(s)	281
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.