pycom17g13550

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0004585
Physical Location & Seq
Forward (+)
11185512 .. 11186610
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
ATGGGACGAATCCTGGACCAATTGATGGCTCAGTGCTTTATGATCGATCCTGTTGACAAGCATGTGTCTTCAGCAGTTTGGGATGGACAGGAGCGTGGTGCACTCAGATGCCACGAACACACTTCAAAGCTTGATCAATGGACACTCACGGAAAAACAGGTTGAGTTGGTAGAGAAGGCTGGATTTGGTTATTTAAGATGGATTCCGGCAATTAGTCTAGATAACCCACTCATTTCTGCACTAGTTGAAAGGTGGAGGAGAGAAACAAACACTTTTCACCTTAATGTTGGAGAAATGACGGTAACTCTACAGGATGTCACACTATTGCTCGGACTAGCAATTGATGGAGAACCTGTAATTGGTATAACACATACCACCTGCAACTCAGTTTGTGACAGGTATCTTGGAAAAGTACCAGAGCCTAGTTATACCAGCGGTGGAATGGTGAAGCTAAGCTGGTTGAAGGAGTTCTTTTCCCATTGTCCCAAAGATGCATCACTTGAAGTGATTGAATGTCATACCCGTGCGTACCTCTTATACCTTGTCGGAAGTACAATATTTTCCACAACTACTGGGAATAAAGTCCCTGTCATGTACCTTCCACTGTTCGAGAATTTTGACGATTGTGGGAGATATGCTTGGGGGGCAGCAGCATTGGCATTCTTGTACAGGGCACTGGGCAATGCGTCCCTGAGATCTCAAAGTACAATTAGTGGCTGTTTAACGCTACTGCAGTGCTGGAGTTACTTTCACCTAAATATTGGACGACCAAAGCTCAATACTGATTCAATGCATGATCGTTTTCTCTGGCTTTTGTGCTTAGCTGGAAGGGAAAGCAAAGTGGGCCAACAACAAACCGTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

289

Amino Acids

32.43

Weight (kDa)

6.3

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 61 - 261 2.9e-74 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 386
Acc36I ACCTGC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 25
AciI CCGC 1 cut(s) 435
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 6 cut(s) 414, 530, 553, 596, 668, 706
AfiI CCNNNNNNNGG 2 cut(s) 25, 359
AgsI TTSAA 6 cut(s) 126, 248, 463, 503, 512, 789
AhlI ACTAGT 1 cut(s) 241
AjnI CCWGG 1 cut(s) 12
AjuI GAANNNNNNNTTGG 2 cut(s) 342, 374
AluBI AGCT 5 cut(s) 130, 451, 456, 775, 824
AluI AGCT 5 cut(s) 130, 451, 456, 775, 824
Alw21I GWGCWC 1 cut(s) 103
Alw44I GTGCAC 1 cut(s) 99
AlwI GGATC 1 cut(s) 41
AoxI GGCC 1 cut(s) 844
ApaLI GTGCAC 1 cut(s) 99
ApeKI GCWGC 2 cut(s) 647, 650
ApoI RAATTY 1 cut(s) 613
Asp700I GAANNNNTTC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 16, 844
AsuHPI GGTGA 3 cut(s) 269, 457, 743
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 2 cut(s) 103, 676
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 659, 662
BccI CCATC 4 cut(s) 19, 77, 192, 338
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 133
BcuI ACTAGT 1 cut(s) 241
BfaI CTAG 4 cut(s) 218, 242, 335, 423
BfmI CTRYAG 2 cut(s) 308, 731
BfuAI ACCTGC 1 cut(s) 386
BglII AGATCT 1 cut(s) 695
BisI GCNGC 2 cut(s) 648, 651
BlpI GCTNAGC 2 cut(s) 452, 820
BlsI GCNGC 2 cut(s) 649, 652
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 16, 844
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 2 cut(s) 582, 686
BmsI GCATC 3 cut(s) 98, 481, 503
BmuI ACTGGG 2 cut(s) 582, 686
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 760
Bpu1102I GCTNAGC 2 cut(s) 452, 820
Bsa29I ATCGAT 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 359
Bse1I ACTGG 2 cut(s) 577, 681
Bse3DI GCAATG 1 cut(s) 688
BseBI CCWGG 1 cut(s) 14
BseCI ATCGAT 1 cut(s) 45
BseGI GGATG 2 cut(s) 88, 319
BseLI CCNNNNNNNGG 2 cut(s) 25, 359
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 4 cut(s) 44, 118, 399, 683
BseNI ACTGG 2 cut(s) 577, 681
BseRI GAGGAG 1 cut(s) 271
BseSI GKGCMC 2 cut(s) 103, 676
BseXI GCAGC 2 cut(s) 659, 662
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 1 cut(s) 846
BshVI ATCGAT 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 103
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 4 cut(s) 18, 468, 569, 673
BslI CCNNNNNNNGG 2 cut(s) 25, 359
BsmFI GGGAC 4 cut(s) 18, 468, 569, 673
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 1 cut(s) 846
Bsp1286I GDGCHC 2 cut(s) 103, 676
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 5 cut(s) 42, 46, 133, 695, 796
Bsp1720I GCTNAGC 2 cut(s) 452, 820
BspACI CCGC 1 cut(s) 435
BspANI GGCC 1 cut(s) 846
BspCNI CTCAG 4 cut(s) 43, 117, 398, 684
BspDI ATCGAT 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 735
BspMI ACCTGC 1 cut(s) 386
BspPI GGATC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 688
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 2 cut(s) 577, 681
BssMI GATC 5 cut(s) 42, 46, 133, 695, 796
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 3 cut(s) 301, 606, 859
BstAUI TGTACA 1 cut(s) 666
BstDEI CTNAG 6 cut(s) 30, 104, 385, 452, 692, 820
BstF5I GGATG 2 cut(s) 88, 319
BstKTI GATC 5 cut(s) 45, 49, 136, 698, 799
BstMBI GATC 5 cut(s) 42, 46, 133, 695, 796
BstMWI GCNNNNNNNGC 3 cut(s) 644, 656, 843
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 12
BstSFI CTRYAG 2 cut(s) 308, 731
BstSLI GKGCMC 2 cut(s) 103, 676
BstV1I GCAGC 2 cut(s) 659, 662
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 695
BstYI RGATCY 1 cut(s) 695
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 1 cut(s) 846
BsuTUI ATCGAT 1 cut(s) 45
BtsCI GGATG 2 cut(s) 88, 319
BtsI GCAGTG 1 cut(s) 740
BtsIMutI CAGTG 4 cut(s) 38, 602, 674, 740
BveI ACCTGC 1 cut(s) 386
Cfr13I GGNCC 2 cut(s) 16, 844
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 1 cut(s) 675
Csp6I GTAC 6 cut(s) 413, 529, 552, 595, 667, 705
CviAII CATG 3 cut(s) 62, 592, 794
CviQI GTAC 6 cut(s) 413, 529, 552, 595, 667, 705
DdeI CTNAG 6 cut(s) 30, 104, 385, 452, 692, 820
DpnI GATC 5 cut(s) 44, 48, 135, 697, 798
DpnII GATC 5 cut(s) 42, 46, 133, 695, 796
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 12
EcoT22I ATGCAT 2 cut(s) 496, 795
FaeI CATG 3 cut(s) 65, 595, 797
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 4 cut(s) 18, 468, 569, 673
FatI CATG 3 cut(s) 61, 591, 793
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 648, 651
FokI GGATG 2 cut(s) 95, 326
Fsp4HI GCNGC 2 cut(s) 648, 651
FspBI CTAG 4 cut(s) 218, 242, 335, 423
GluI GCNGC 2 cut(s) 648, 651
GsuI CTGGAG 1 cut(s) 760
HaeIII GGCC 1 cut(s) 846
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 675
Hin1II CATG 3 cut(s) 65, 595, 797
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 9, 202, 785
HpaII CCGG 1 cut(s) 206
HphI GGTGA 3 cut(s) 269, 457, 743
Hpy166II GTNNAC 2 cut(s) 55, 101
Hpy188I TCNGA 3 cut(s) 107, 332, 548
Hpy188III TCNNGA 2 cut(s) 218, 610
Hpy8I GTNNAC 2 cut(s) 55, 101
HpyAV CCTTC 4 cut(s) 169, 457, 608, 822
HpyCH4III ACNGT 3 cut(s) 301, 606, 859
HpyCH4V TGCA 6 cut(s) 101, 239, 381, 494, 733, 793
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 656, 843
HpyF3I CTNAG 6 cut(s) 30, 104, 385, 452, 692, 820
Hsp92II CATG 3 cut(s) 65, 595, 797
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 5 cut(s) 42, 46, 133, 695, 796
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 2 cut(s) 659, 662
LweI GCATC 3 cut(s) 98, 481, 503
MaeI CTAG 4 cut(s) 218, 242, 335, 423
MaeIII GTNAC 4 cut(s) 301, 316, 392, 743
MalI GATC 5 cut(s) 44, 48, 135, 697, 798
MboI GATC 5 cut(s) 42, 46, 133, 695, 796
MboII GAAGA 1 cut(s) 60
MfeI CAATTG 2 cut(s) 20, 339
MflI RGATCY 1 cut(s) 695
MhlI GDGCHC 2 cut(s) 103, 676
MluCI AATT 6 cut(s) 20, 210, 339, 357, 613, 708
MmeI TCCRAC 2 cut(s) 268, 526
MnlI CCTC 2 cut(s) 249, 542
Mph1103I ATGCAT 2 cut(s) 496, 795
MroXI GAANNNNTTC 1 cut(s) 467
MseI TTAA 3 cut(s) 194, 282, 722
MslI CAYNNNNRTG 3 cut(s) 106, 282, 522
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 2 cut(s) 20, 339
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 644, 656, 843
NdeII GATC 5 cut(s) 42, 46, 133, 695, 796
NlaIII CATG 3 cut(s) 65, 595, 797
NmuCI GTSAC 2 cut(s) 316, 392
NsiI ATGCAT 2 cut(s) 496, 795
NspI RCATGY 1 cut(s) 65
PaqCI CACCTGC 1 cut(s) 386
PctI GAATGC 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 3 cut(s) 9, 202, 785
PflMI CCANNNNNTGG 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 12
PkrI GCNGC 2 cut(s) 649, 652
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 2 cut(s) 16, 844
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 1 cut(s) 695
RsaI GTAC 6 cut(s) 414, 530, 553, 596, 668, 706
RsaNI GTAC 6 cut(s) 413, 529, 552, 595, 667, 705
RseI CAYNNNNRTG 3 cut(s) 106, 282, 522
SaqAI TTAA 3 cut(s) 194, 282, 722
SatI GCNGC 2 cut(s) 648, 651
Sau3AI GATC 5 cut(s) 42, 46, 133, 695, 796
Sau96I GGNCC 2 cut(s) 16, 844
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 2 cut(s) 103, 676
SfaNI GCATC 3 cut(s) 98, 481, 503
SfcI CTRYAG 2 cut(s) 308, 731
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 3 cut(s) 106, 282, 522
SpeI ACTAGT 1 cut(s) 241
Sse9I AATT 6 cut(s) 20, 210, 339, 357, 613, 708
SsiI CCGC 1 cut(s) 435
SspI AATATT 2 cut(s) 558, 760
SspMI CTAG 4 cut(s) 218, 242, 335, 423
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 301, 606, 859
TaqI TCGA 2 cut(s) 45, 609
TasI AATT 6 cut(s) 20, 210, 339, 357, 613, 708
TatI WGTACW 3 cut(s) 551, 666, 704
TfiI GAWTC 3 cut(s) 9, 202, 785
Tru1I TTAA 3 cut(s) 194, 282, 722
Tru9I TTAA 3 cut(s) 194, 282, 722
TscAI CASTG 4 cut(s) 38, 609, 681, 740
TseFI GTSAC 2 cut(s) 316, 392
TseI GCWGC 2 cut(s) 647, 650
Tsp45I GTSAC 2 cut(s) 316, 392
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 4 cut(s) 38, 609, 681, 740
Van91I CCANNNNNTGG 1 cut(s) 25
VneI GTGCAC 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 1 cut(s) 613
XbaI TCTAGA 1 cut(s) 217
XceI RCATGY 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 4 cut(s) 218, 242, 335, 423
Zsp2I ATGCAT 2 cut(s) 496, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.