Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004585

Physical Location & Seq

Genomic Coordinates Reverse (-)

54405595 .. 54409548

Gene Structure 3954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0422800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTCATCCGCCCTACGACCCCTACTACCTGCCGCAACCACAGCAACCGCCGCCGCTACCGGATTACAGCGACCGGAGCGTGATTAACACGCTCTTCGTCTCGGGCCTCCCCGACGACGTCAAGGCGCGTGAAATTCACAACCTCTTCCGCCGGCGACCTGGCTTCGACTCTTGCCAGCTCAAGTACACCGGCCGCGGCAACCAGGTCGTTGCTTTTGCTACGTTTTTCAATCACCAATCGGCAATTGCAGCTCTACATGCGTTGAATGGTGTCAAATTTGATCCTCAAACTGGGTCCTTGCTGCATATTGAACTTGCTAGATCAAACTCGAGAAGGAAGCGTAAACCAGGTAGTGGAGCCTATGTGGTTATAGATAAAAGGAGTAAAAAAGAGGATGATAACCAAGGAACGTCAAGCGATGATGGAGACAGTGAATCTGAAGAACCATCTGAAACTGACAATCATGATTCTGGCGAGAAGAGTGATTTAGCAAACACAAAGAGTAGTGAGGCAGTGGTGGATTCTGATATTGCTGTAGCTGCCGTAAATGAGCAATCCGAAAAGCATGTTGATGGAGGACAATGTTCCACTCTATTCATTGCAAATCTAGGTCCTAATTGCACCGAAGATGAACTGAAGCAAGTTTTGTCTCAGTATCCCGGATTTAATGTGATCAAATTGCGTGCTAAAGGTGGGATGCCAGTTGCTTTTGCTGATTTTGAGGAAATTGAACAAGCTAATAAAGCCATGGATGAACTTCGTGGCACCATGTTACCATCTTCAGACCGGGGTGGCATGCATATAGAATATGCAAGGTCTAAAATGAGGAAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMD

Protein Analysis

279

Amino Acids

30.73

Weight (kDa)

5.53

Isoelectric Point (pI)

70.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	32 - 95	1.3e-08	RNA recognition motif
RRM_1	PF00076	199 - 261	4.2e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04865 AT2G04865
fragaria_vesca	FvH4_6g37771 FvH4_6g37771 FvH4_6g37771 FvH4_6g37771 FvH4_6g37771 FvH4_6g37771 FvH4_6g37771 FvH4_6g37771 FvH4_6g37771 FvH4_6g37771 FvH4_6g37771
malus_domestica	MD09G1156100.v1.1 MD17G1142200.v1.1 MD17G1142300.v1.1
prunus_persica	Prupe.3G169000_v2.0.a1
pyrus_communis	pycom09g07490 pycom17g13540 pycom17g13550 pycom17g13560
rosa_chinensis	RchiOBHm_Chr2g0150841
rosa_laevigata	RLG00000020511
rosa_multiflora	Rmu_sc0007617.1_g000015
rosa_roxburghii	Rroxscaffold_2G00096920
rosa_rugosa	Rorug02G0422700 Rorug02G0422800
rosa_samantha	Rh2AG483000 Rh2CG469300 Rh2DG506400
rosa_wichuraiana	Rw2G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	123
Acc36I	ACCTGC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	767
AccB7I	CCANNNNNTGG	1 cut(s)	356
AccII	CGCG	2 cut(s)	130, 198
AciI	CCGC	8 cut(s)	11, 35, 50, 53, 56, 151, 196, 198
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	135, 278
AcuI	CTGAAG	3 cut(s)	462, 659, 768
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	293, 356
AgsI	TTSAA	4 cut(s)	232, 268, 314, 734
AjnI	CCWGG	3 cut(s)	160, 204, 349
AluBI	AGCT	4 cut(s)	181, 254, 542, 740
AluI	AGCT	4 cut(s)	181, 254, 542, 740
Alw26I	GTCTC	3 cut(s)	106, 423, 657
AlwI	GGATC	1 cut(s)	278
Ama87I	CYCGRG	2 cut(s)	103, 331
AoxI	GGCC	2 cut(s)	106, 193
ApeKI	GCWGC	3 cut(s)	251, 304, 542
ApoI	RAATTY	2 cut(s)	135, 278
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	106, 297, 614
AsuC2I	CCSGG	2 cut(s)	663, 791
AsuHPI	GGTGA	1 cut(s)	227
AvaI	CYCGRG	2 cut(s)	103, 331
AvaII	GGWCC	2 cut(s)	297, 614
BanI	GGYRCC	1 cut(s)	767
BbvI	GCAGC	3 cut(s)	263, 291, 529
BccI	CCATC	4 cut(s)	419, 457, 569, 787
BceAI	ACGGC	1 cut(s)	530
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	3 cut(s)	162, 206, 351
BciVI	GTATCC	1 cut(s)	669
BclI	TGATCA	1 cut(s)	675
BcnI	CCSGG	2 cut(s)	663, 791
BcoDI	GTCTC	3 cut(s)	106, 423, 657
BfaI	CTAG	2 cut(s)	321, 611
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	669
BisI	GCNGC	8 cut(s)	35, 53, 56, 196, 199, 252, 305, 543
BlsI	GCNGC	8 cut(s)	36, 54, 57, 197, 200, 253, 306, 544
Bme1390I	CCNGG	5 cut(s)	162, 206, 351, 663, 791
Bme18I	GGWCC	2 cut(s)	297, 614
BmeT110I	CYCGRG	2 cut(s)	103, 331
BmgT120I	GGNCC	3 cut(s)	106, 297, 614
BmiI	GGNNCC	3 cut(s)	298, 361, 769
BmrFI	CCNGG	5 cut(s)	162, 206, 351, 663, 791
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	690
BmuI	ACTGGG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	2 cut(s)	663, 791
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	4 cut(s)	196, 406, 750, 790
BsaWI	WCCGGW	2 cut(s)	61, 75
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 356
Bse118I	RCCGGY	2 cut(s)	153, 191
Bse1I	ACTGG	2 cut(s)	298, 704
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	3 cut(s)	162, 206, 351
BseDI	CCNNGG	4 cut(s)	196, 406, 750, 790
BseGI	GGATG	4 cut(s)	7, 403, 705, 760
BseLI	CCNNNNNNNGG	2 cut(s)	293, 356
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	668
BseNI	ACTGG	2 cut(s)	298, 704
BseX3I	CGGCCG	1 cut(s)	193
BseXI	GCAGC	3 cut(s)	263, 291, 529
Bsh1236I	CGCG	2 cut(s)	130, 198
Bsh1285I	CGRYCG	2 cut(s)	76, 196
BshFI	GGCC	2 cut(s)	108, 195
BshNI	GGYRCC	1 cut(s)	767
BsiEI	CGRYCG	2 cut(s)	76, 196
BsiHKCI	CYCGRG	2 cut(s)	103, 331
BsiSI	CCGG	6 cut(s)	62, 76, 154, 192, 663, 790
BslI	CCNNNNNNNGG	2 cut(s)	293, 356
BsmAI	GTCTC	3 cut(s)	106, 423, 657
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	108, 195
BsoBI	CYCGRG	2 cut(s)	103, 331
Bsp143I	GATC	3 cut(s)	283, 323, 675
Bsp19I	CCATGG	1 cut(s)	750
BspACI	CCGC	8 cut(s)	11, 35, 50, 53, 56, 151, 196, 198
BspANI	GGCC	2 cut(s)	108, 195
BspCNI	CTCAG	1 cut(s)	667
BspFNI	CGCG	2 cut(s)	130, 198
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	3 cut(s)	298, 361, 769
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	767
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	2 cut(s)	153, 191
BsrI	ACTGG	2 cut(s)	298, 704
BssAI	RCCGGY	2 cut(s)	153, 191
BssECI	CCNNGG	4 cut(s)	196, 406, 750, 790
BssMI	GATC	3 cut(s)	283, 323, 675
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	2 cut(s)	406, 750
Bst2UI	CCWGG	3 cut(s)	162, 206, 351
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	3 cut(s)	101, 152, 476
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	4 cut(s)	155, 179, 687, 800
BstDEI	CTNAG	1 cut(s)	654
BstDSI	CCRYGG	2 cut(s)	196, 750
BstF5I	GGATG	4 cut(s)	7, 403, 705, 760
BstFNI	CGCG	2 cut(s)	130, 198
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	3 cut(s)	286, 326, 678
BstMAI	GTCTC	3 cut(s)	106, 423, 657
BstMBI	GATC	3 cut(s)	283, 323, 675
BstMCI	CGRYCG	2 cut(s)	76, 196
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 52, 78, 251, 260, 542, 746
BstNI	CCWGG	3 cut(s)	162, 206, 351
BstNSI	RCATGY	3 cut(s)	263, 572, 802
BstSCI	CCNGG	5 cut(s)	160, 204, 349, 661, 789
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	2 cut(s)	130, 198
BstV1I	GCAGC	3 cut(s)	263, 291, 529
BstZI	CGGCCG	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	108, 195
BtgI	CCRYGG	2 cut(s)	196, 750
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	4 cut(s)	7, 403, 705, 760
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	439, 522
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	4 cut(s)	155, 179, 687, 800
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	2 cut(s)	153, 191
Cfr13I	GGNCC	3 cut(s)	106, 297, 614
Cfr42I	CCGCGG	1 cut(s)	199
CsiI	ACCWGGT	2 cut(s)	204, 349
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	6 cut(s)	260, 467, 569, 751, 772, 799
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	654
DpnI	GATC	3 cut(s)	285, 325, 677
DpnII	GATC	3 cut(s)	283, 323, 675
EaeI	YGGCCR	1 cut(s)	193
EagI	CGGCCG	1 cut(s)	193
Eam1104I	CTCTTC	3 cut(s)	101, 152, 476
EarI	CTCTTC	3 cut(s)	101, 152, 476
EciI	GGCGGA	1 cut(s)	140
EclXI	CGGCCG	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	406, 750
Eco47I	GGWCC	2 cut(s)	297, 614
Eco52I	CGGCCG	1 cut(s)	193
Eco57I	CTGAAG	3 cut(s)	462, 659, 768
Eco88I	CYCGRG	2 cut(s)	103, 331
EcoO109I	RGGNCCY	2 cut(s)	297, 614
EcoRII	CCWGG	3 cut(s)	160, 204, 349
EcoT14I	CCWWGG	2 cut(s)	406, 750
EcoT22I	ATGCAT	1 cut(s)	804
ErhI	CCWWGG	2 cut(s)	406, 750
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	6 cut(s)	263, 470, 572, 754, 775, 802
FatI	CATG	6 cut(s)	259, 466, 568, 750, 771, 798
FbaI	TGATCA	1 cut(s)	675
Fnu4HI	GCNGC	8 cut(s)	35, 53, 56, 196, 199, 252, 305, 543
FokI	GGATG	3 cut(s)	410, 712, 767
Fsp4HI	GCNGC	8 cut(s)	35, 53, 56, 196, 199, 252, 305, 543
FspBI	CTAG	2 cut(s)	321, 611
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	8 cut(s)	35, 53, 56, 196, 199, 252, 305, 543
HaeIII	GGCC	2 cut(s)	108, 195
HapII	CCGG	6 cut(s)	62, 76, 154, 192, 663, 790
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	6 cut(s)	263, 470, 572, 754, 775, 802
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	4 cut(s)	170, 437, 470, 524
HpaII	CCGG	6 cut(s)	62, 76, 154, 192, 663, 790
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	189, 347
Hpy188I	TCNGA	5 cut(s)	442, 454, 529, 562, 787
Hpy188III	TCNNGA	2 cut(s)	333, 467
Hpy8I	GTNNAC	2 cut(s)	189, 347
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyAV	CCTTC	1 cut(s)	330
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	3 cut(s)	120, 224, 413
HpyCH4V	TGCA	6 cut(s)	251, 307, 605, 624, 802, 815
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 52, 78, 251, 260, 542, 746
HpyF3I	CTNAG	1 cut(s)	654
HpySE526I	ACGT	3 cut(s)	120, 224, 413
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	6 cut(s)	263, 470, 572, 754, 775, 802
HspAI	GCGC	1 cut(s)	128
KroI	GCCGGC	1 cut(s)	153
KroNI	GCCGGC	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	675
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	283, 323, 675
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	78, 359
Lsp1109I	GCAGC	3 cut(s)	263, 291, 529
LweI	GCATC	1 cut(s)	690
MabI	ACCWGGT	2 cut(s)	204, 349
MaeI	CTAG	2 cut(s)	321, 611
MaeII	ACGT	3 cut(s)	120, 224, 413
MaeIII	GTNAC	1 cut(s)	774
MalI	GATC	3 cut(s)	285, 325, 677
MboI	GATC	3 cut(s)	283, 323, 675
MboII	GAAGA	6 cut(s)	88, 139, 455, 493, 641, 774
MfeI	CAATTG	1 cut(s)	246
MluCI	AATT	6 cut(s)	135, 246, 278, 619, 680, 729
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	8 cut(s)	119, 155, 297, 388, 505, 572, 718, 822
Mph1103I	ATGCAT	1 cut(s)	804
MreI	CGCCGGCG	1 cut(s)	153
MroNI	GCCGGC	1 cut(s)	153
MseI	TTAA	2 cut(s)	87, 669
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	198
MspI	CCGG	6 cut(s)	62, 76, 154, 192, 663, 790
MspR9I	CCNGG	5 cut(s)	162, 206, 351, 663, 791
MunI	CAATTG	1 cut(s)	246
MvaI	CCWGG	3 cut(s)	162, 206, 351
MvnI	CGCG	2 cut(s)	130, 198
MwoI	GCNNNNNNNGC	7 cut(s)	43, 52, 78, 251, 260, 542, 746
NaeI	GCCGGC	1 cut(s)	155
NciI	CCSGG	2 cut(s)	663, 791
NcoI	CCATGG	1 cut(s)	750
NdeII	GATC	3 cut(s)	283, 323, 675
NgoMIV	GCCGGC	1 cut(s)	153
NlaIII	CATG	6 cut(s)	263, 470, 572, 754, 775, 802
NlaIV	GGNNCC	3 cut(s)	298, 361, 769
NsiI	ATGCAT	1 cut(s)	804
NspI	RCATGY	3 cut(s)	263, 572, 802
PaeI	GCATGC	1 cut(s)	802
PaeR7I	CTCGAG	1 cut(s)	331
PagI	TCATGA	1 cut(s)	466
PciSI	GCTCTTC	1 cut(s)	101
PdiI	GCCGGC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	437, 470, 524
PflFI	GACNNNGTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	661
PkrI	GCNGC	8 cut(s)	36, 54, 57, 197, 200, 253, 306, 544
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	2 cut(s)	297, 614
Psp5II	RGGWCCY	2 cut(s)	297, 614
Psp6I	CCWGG	3 cut(s)	160, 204, 349
PspGI	CCWGG	3 cut(s)	160, 204, 349
PspN4I	GGNNCC	3 cut(s)	298, 361, 769
PspPI	GGNCC	3 cut(s)	106, 297, 614
PspPPI	RGGWCCY	2 cut(s)	297, 614
PsyI	GACNNNGTC	1 cut(s)	119
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	573
SacII	CCGCGG	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	87, 669
SatI	GCNGC	8 cut(s)	35, 53, 56, 196, 199, 252, 305, 543
Sau3AI	GATC	3 cut(s)	283, 323, 675
Sau96I	GGNCC	3 cut(s)	106, 297, 614
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	5 cut(s)	162, 206, 351, 663, 791
SexAI	ACCWGGT	2 cut(s)	204, 349
SfaNI	GCATC	1 cut(s)	690
SfcI	CTRYAG	1 cut(s)	537
Sfr274I	CTCGAG	1 cut(s)	331
Sfr303I	CCGCGG	1 cut(s)	199
SgrAI	CRCCGGYG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	297, 614
SlaI	CTCGAG	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	182, 331
SmoI	CTYRAG	2 cut(s)	182, 331
SphI	GCATGC	1 cut(s)	802
Sse9I	AATT	6 cut(s)	135, 246, 278, 619, 680, 729
SsiI	CCGC	8 cut(s)	11, 35, 50, 53, 56, 151, 196, 198
SspMI	CTAG	2 cut(s)	321, 611
StyD4I	CCNGG	5 cut(s)	160, 204, 349, 661, 789
StyI	CCWWGG	2 cut(s)	406, 750
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	3 cut(s)	123, 227, 416
TaqI	TCGA	2 cut(s)	168, 332
TasI	AATT	6 cut(s)	135, 246, 278, 619, 680, 729
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	5 cut(s)	37, 55, 58, 198, 201
TfiI	GAWTC	3 cut(s)	437, 470, 524
Tru1I	TTAA	2 cut(s)	87, 669
Tru9I	TTAA	2 cut(s)	87, 669
TscAI	CASTG	2 cut(s)	439, 522
TseI	GCWGC	3 cut(s)	251, 304, 542
TspDTI	ATGAA	3 cut(s)	589, 648, 771
TspRI	CASTG	2 cut(s)	439, 522
Tth111I	GACNNNGTC	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	297, 614
XapI	RAATTY	2 cut(s)	135, 278
XceI	RCATGY	3 cut(s)	263, 572, 802
XhoI	CTCGAG	1 cut(s)	331
XspI	CTAG	2 cut(s)	321, 611
ZraI	GACGTC	1 cut(s)	121
Zsp2I	ATGCAT	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.