pycom17g13560

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0004585
Physical Location & Seq
Forward (+)
11186774 .. 11188072
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1191 bp
ATGGACAGTACAGTGATTCCAGACTTTATCAAGAGCAATCTGATCATAGGTAGGTCCAAAACAATGCTAATATGCTTTGACAAGGCAGAAAGGCATCTCCCAAATCGTTGCTTAAGGCAATACGGCAAGTTTCAGTCAATCCCAGAGGATGTACAGCGATGGGAGAGAAAAAGTCGCGGAGTTGATGGTGGGGTTGACTTGTCAGGGAAAATGGAGTCAGAGCTTAATGAATGGCTGGAACGTCGATATCATATTGTGGATGGTGATGATGGTGCAGATGAAAGTGATTATATGCTGTGGTACTTGAAAATTACACGCAAATTTATAGGGAGGCCTATATCTCTCTCATCTGAGTTTCAAAGAACGAATGCTGGGTTGAGGGATATTGCACGCATAGCAGATACATTCATAACAGATGGGTTGAACCAACAACAAGCTGATTCAATAGAAGAAATCAGGAATATTGCGCATCAATGTTTGAGGGACCAGGTAGGTGGTCCGGACATACCATCACCTACCCCACAAAGCGACTTTGGGAAAAGGATAAGAGGAAAGGAGAGGGTAAGAAGAAAAGGTATGGGAAAACGTTTGCGGAAGGATGATCCAGCACAATATATTACTGCTAGTGAGGATGATCAATCCCAGTTTTGTGGTGCCGCTGTCAGGGTTGAGCAGTTACGTTTTCAGGATGCACATAGTGCAGATCATTCGCAACTATATCCTGTTGACAGTGAGGTCACTGCTTTGCATATGATCAGCGGAGATGGTGAGCATGAGAATATGCAGCTATGCAGTGCCGACATGGGGTTCGATCATTCACAGCTAAGCCATGCGGCTGCTGTGGAAGGTAATTCTGAGCTAATCCGTGCAGTTGTGAAGGTCGATGACACACAGCTTTTTGAAGCAACCGAAGAGATCAACTCACAGCTTTGTGATGCAATAAATGAAGTCAAGGACTCACAACAGTCTGATTTAACTAAGGTAGTCGATCCACAGATTTGCAATGCAACTAAGGTCATTGACTCACAGCTCCATGGTGCACATAACGAGGTTGATGACTCAGAGCTTCCTCTTGCTTCGAGTGAGAGTGATCCACACCCATCTAAAGTTGAAGCAGAGGTTGTTCCAGAGCCTTCTCTTGAAACTCCTCAAGATATTGCGCAGCAGAGTAAATGTAGTGTTGTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

397

Amino Acids

44.32

Weight (kDa)

4.89

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 7 - 101 1.6e-18 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 734
Acc16I TGCGCA 2 cut(s) 468, 1161
AccB1I GGYRCC 1 cut(s) 653
AccII CGCG 1 cut(s) 177
AccIII TCCGGA 1 cut(s) 499
AciI CCGC 5 cut(s) 177, 592, 657, 759, 833
AclI AACGTT 1 cut(s) 586
AclWI GGATC 3 cut(s) 596, 983, 1085
AcsI RAATTY 1 cut(s) 320
AdeI CACNNNGTG 1 cut(s) 698
AfaI GTAC 3 cut(s) 10, 153, 302
AfiI CCNNNNNNNGG 2 cut(s) 663, 804
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 7 cut(s) 307, 359, 424, 444, 902, 1112, 1142
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 9 cut(s) 223, 437, 787, 823, 859, 895, 928, 1030, 1066
AluI AGCT 9 cut(s) 223, 437, 787, 823, 859, 895, 928, 1030, 1066
Alw21I GWGCWC 1 cut(s) 1042
Alw44I GTGCAC 1 cut(s) 1038
AlwI GGATC 3 cut(s) 596, 983, 1085
Aor13HI TCCGGA 1 cut(s) 499
AoxI GGCC 1 cut(s) 332
ApaLI GTGCAC 1 cut(s) 1038
ApeKI GCWGC 3 cut(s) 784, 836, 1162
ApoI RAATTY 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 791, 823
AspLEI GCGC 2 cut(s) 469, 1162
AspS9I GGNCC 3 cut(s) 54, 484, 497
AsuHPI GGTGA 3 cut(s) 275, 504, 779
AvaII GGWCC 3 cut(s) 54, 484, 497
BaeGI GKGCMC 1 cut(s) 1042
BanI GGYRCC 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 1042
BbvI GCAGC 3 cut(s) 796, 823, 1174
BccI CCATC 8 cut(s) 153, 179, 254, 263, 410, 517, 758, 1108
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BciT130I CCWGG 1 cut(s) 488
BclI TGATCA 3 cut(s) 42, 634, 753
BfaI CTAG 1 cut(s) 624
BfrI CTTAAG 1 cut(s) 112
BisI GCNGC 5 cut(s) 657, 785, 834, 837, 1163
BlpI GCTNAGC 1 cut(s) 824
BlsI GCNGC 5 cut(s) 658, 786, 835, 838, 1164
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 3 cut(s) 54, 484, 497
BmgT120I GGNCC 3 cut(s) 54, 484, 497
BmiI GGNNCC 2 cut(s) 485, 655
BmrFI CCNGG 1 cut(s) 488
BmrI ACTGGG 1 cut(s) 637
BmsI GCATC 4 cut(s) 103, 478, 679, 925
BmuI ACTGGG 1 cut(s) 637
BplI GAGNNNNNCTC 2 cut(s) 905, 937
Bpu1102I GCTNAGC 1 cut(s) 824
BpuEI CTTGAG 1 cut(s) 1134
BsaJI CCNNGG 1 cut(s) 1033
BsaWI WCCGGW 1 cut(s) 499
Bsc4I CCNNNNNNNGG 2 cut(s) 663, 804
Bse1I ACTGG 1 cut(s) 643
Bse3DI GCAATG 1 cut(s) 1009
BseAI TCCGGA 1 cut(s) 499
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 1033
BseGI GGATG 5 cut(s) 154, 265, 604, 637, 694
BseLI CCNNNNNNNGG 2 cut(s) 663, 804
BseMI GCAATG 1 cut(s) 1009
BseMII CTCAG 3 cut(s) 342, 846, 1074
BseNI ACTGG 1 cut(s) 643
BseRI GAGGAG 1 cut(s) 1137
BseSI GKGCMC 1 cut(s) 1042
BseXI GCAGC 3 cut(s) 796, 823, 1174
BseYI CCCAGC 1 cut(s) 371
BsgI GTGCAG 3 cut(s) 294, 720, 888
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 334
BshNI GGYRCC 1 cut(s) 653
BsiHKAI GWGCWC 1 cut(s) 1042
BsiSI CCGG 1 cut(s) 500
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 2 cut(s) 663, 804
BsmFI GGGAC 1 cut(s) 497
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 1042
Bsp13I TCCGGA 1 cut(s) 499
Bsp1407I TGTACA 1 cut(s) 151
Bsp143I GATC 9 cut(s) 42, 601, 634, 703, 753, 811, 915, 988, 1090
Bsp1720I GCTNAGC 1 cut(s) 824
Bsp19I CCATGG 1 cut(s) 1033
BspACI CCGC 5 cut(s) 177, 592, 657, 759, 833
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 3 cut(s) 343, 847, 1073
BspEI TCCGGA 1 cut(s) 499
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 485, 655
BspPI GGATC 3 cut(s) 596, 983, 1085
BspT107I GGYRCC 1 cut(s) 653
BspTI CTTAAG 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 1009
BsrGI TGTACA 1 cut(s) 151
BsrI ACTGG 1 cut(s) 643
BssECI CCNNGG 1 cut(s) 1033
BssMI GATC 9 cut(s) 42, 601, 634, 703, 753, 811, 915, 988, 1090
BssT1I CCWWGG 1 cut(s) 1033
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 4 cut(s) 8, 13, 731, 966
Bst6I CTCTTC 1 cut(s) 906
BstAFI CTTAAG 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 698
BstAUI TGTACA 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 6 cut(s) 351, 824, 855, 978, 1011, 1060
BstDSI CCRYGG 1 cut(s) 1033
BstF5I GGATG 5 cut(s) 154, 265, 604, 637, 694
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 2 cut(s) 469, 1162
BstKTI GATC 9 cut(s) 45, 604, 637, 706, 756, 814, 918, 991, 1093
BstMBI GATC 9 cut(s) 42, 601, 634, 703, 753, 811, 915, 988, 1090
BstMWI GCNNNNNNNGC 2 cut(s) 395, 698
BstNI CCWGG 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 1042
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 796, 823, 1174
BstXI CCANNNNNNTGG 2 cut(s) 494, 650
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 1033
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 5 cut(s) 154, 265, 604, 637, 694
BtsI GCAGTG 2 cut(s) 738, 799
BtsIMutI CAGTG 4 cut(s) 18, 736, 738, 799
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 2 cut(s) 469, 1162
Cfr13I GGNCC 3 cut(s) 54, 484, 497
CsiI ACCWGGT 1 cut(s) 486
Csp6I GTAC 3 cut(s) 9, 152, 301
CviAII CATG 4 cut(s) 773, 802, 830, 1034
CviQI GTAC 3 cut(s) 9, 152, 301
DdeI CTNAG 6 cut(s) 351, 824, 855, 978, 1011, 1060
DpnI GATC 9 cut(s) 44, 603, 636, 705, 755, 813, 917, 990, 1092
DpnII GATC 9 cut(s) 42, 601, 634, 703, 753, 811, 915, 988, 1090
DraIII CACNNNGTG 1 cut(s) 698
DrdI GACNNNNNNGTC 1 cut(s) 734
DseDI GACNNNNNNGTC 1 cut(s) 734
Eam1104I CTCTTC 1 cut(s) 906
EarI CTCTTC 1 cut(s) 906
Eco130I CCWWGG 1 cut(s) 1033
Eco147I AGGCCT 1 cut(s) 334
Eco32I GATATC 1 cut(s) 248
Eco47I GGWCC 3 cut(s) 54, 484, 497
EcoRII CCWGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 1033
ErhI CCWWGG 1 cut(s) 1033
FaeI CATG 4 cut(s) 776, 805, 833, 1037
FaqI GGGAC 1 cut(s) 497
FatI CATG 4 cut(s) 772, 801, 829, 1033
FauNDI CATATG 1 cut(s) 750
FbaI TGATCA 3 cut(s) 42, 634, 753
Fnu4HI GCNGC 5 cut(s) 657, 785, 834, 837, 1163
FokI GGATG 5 cut(s) 161, 272, 611, 644, 701
Fsp4HI GCNGC 5 cut(s) 657, 785, 834, 837, 1163
FspBI CTAG 1 cut(s) 624
FspI TGCGCA 2 cut(s) 468, 1161
GlaI GCGC 2 cut(s) 468, 1161
GluI GCNGC 5 cut(s) 657, 785, 834, 837, 1163
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 334
HapII CCGG 1 cut(s) 500
HhaI GCGC 2 cut(s) 469, 1162
Hin1II CATG 4 cut(s) 776, 805, 833, 1037
Hin6I GCGC 2 cut(s) 467, 1160
HinP1I GCGC 2 cut(s) 467, 1160
HincII GTYRAC 2 cut(s) 196, 727
HindII GTYRAC 2 cut(s) 196, 727
HinfI GANTC 6 cut(s) 16, 215, 440, 956, 1022, 1058
HpaII CCGG 1 cut(s) 500
HphI GGTGA 3 cut(s) 275, 504, 779
Hpy166II GTNNAC 3 cut(s) 196, 727, 1040
Hpy188I TCNGA 6 cut(s) 42, 220, 352, 856, 970, 1063
Hpy188III TCNNGA 8 cut(s) 20, 31, 457, 500, 686, 1127, 1139, 1151
Hpy8I GTNNAC 3 cut(s) 196, 727, 1040
Hpy99I CGWCG 1 cut(s) 246
HpyAV CCTTC 4 cut(s) 589, 839, 871, 1143
HpyCH4III ACNGT 4 cut(s) 8, 13, 731, 966
HpyCH4IV ACGT 3 cut(s) 241, 586, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 698
HpyF3I CTNAG 6 cut(s) 351, 824, 855, 978, 1011, 1060
HpySE526I ACGT 3 cut(s) 241, 586, 679
Hsp92II CATG 4 cut(s) 776, 805, 833, 1037
HspAI GCGC 2 cut(s) 467, 1160
Kpn2I TCCGGA 1 cut(s) 499
Ksp22I TGATCA 3 cut(s) 42, 634, 753
Kzo9I GATC 9 cut(s) 42, 601, 634, 703, 753, 811, 915, 988, 1090
LmnI GCTCC 1 cut(s) 1035
Lsp1109I GCAGC 3 cut(s) 796, 823, 1174
LweI GCATC 4 cut(s) 103, 478, 679, 925
MabI ACCWGGT 1 cut(s) 486
MaeI CTAG 1 cut(s) 624
MaeII ACGT 3 cut(s) 241, 586, 679
MaeIII GTNAC 2 cut(s) 675, 736
MalI GATC 9 cut(s) 44, 603, 636, 705, 755, 813, 917, 990, 1092
MboI GATC 9 cut(s) 42, 601, 634, 703, 753, 811, 915, 988, 1090
MboII GAAGA 3 cut(s) 461, 579, 923
MhlI GDGCHC 1 cut(s) 1042
MluCI AATT 3 cut(s) 309, 320, 850
MlyI GAGTC 4 cut(s) 224, 950, 1016, 1052
MroI TCCGGA 1 cut(s) 499
MseI TTAA 3 cut(s) 113, 225, 974
MspA1I CMGCKG 2 cut(s) 659, 759
MspCI CTTAAG 1 cut(s) 112
MspI CCGG 1 cut(s) 500
MspR9I CCNGG 1 cut(s) 488
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 488
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 395, 698
NcoI CCATGG 1 cut(s) 1033
NdeI CATATG 1 cut(s) 750
NdeII GATC 9 cut(s) 42, 601, 634, 703, 753, 811, 915, 988, 1090
NlaIII CATG 4 cut(s) 776, 805, 833, 1037
NlaIV GGNNCC 2 cut(s) 485, 655
NmuCI GTSAC 1 cut(s) 736
NsbI TGCGCA 2 cut(s) 468, 1161
PceI AGGCCT 1 cut(s) 334
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 2 cut(s) 16, 440
PkrI GCNGC 5 cut(s) 658, 786, 835, 838, 1164
PleI GAGTC 4 cut(s) 223, 950, 1016, 1052
PpsI GAGTC 4 cut(s) 223, 950, 1016, 1052
Psp1406I AACGTT 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 486
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 2 cut(s) 485, 655
PspPI GGNCC 3 cut(s) 54, 484, 497
RsaI GTAC 3 cut(s) 10, 153, 302
RsaNI GTAC 3 cut(s) 9, 152, 301
SaqAI TTAA 3 cut(s) 113, 225, 974
SatI GCNGC 5 cut(s) 657, 785, 834, 837, 1163
Sau3AI GATC 9 cut(s) 42, 601, 634, 703, 753, 811, 915, 988, 1090
Sau96I GGNCC 3 cut(s) 54, 484, 497
SchI GAGTC 4 cut(s) 224, 950, 1016, 1052
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 1 cut(s) 1042
SexAI ACCWGGT 1 cut(s) 486
SfaNI GCATC 4 cut(s) 103, 478, 679, 925
SinI GGWCC 3 cut(s) 54, 484, 497
SmlI CTYRAG 2 cut(s) 112, 1149
SmoI CTYRAG 2 cut(s) 112, 1149
Sse9I AATT 3 cut(s) 309, 320, 850
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 5 cut(s) 177, 592, 657, 759, 833
SspI AATATT 1 cut(s) 463
SspMI CTAG 1 cut(s) 624
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 1 cut(s) 1033
TaaI ACNGT 4 cut(s) 8, 13, 731, 966
TaiI ACGT 3 cut(s) 244, 589, 682
TaqI TCGA 5 cut(s) 244, 810, 882, 987, 1079
TasI AATT 3 cut(s) 309, 320, 850
TatI WGTACW 2 cut(s) 8, 151
TauI GCSGC 2 cut(s) 659, 836
TfiI GAWTC 2 cut(s) 16, 440
Tru1I TTAA 3 cut(s) 113, 225, 974
Tru9I TTAA 3 cut(s) 113, 225, 974
TscAI CASTG 4 cut(s) 18, 736, 745, 799
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 3 cut(s) 784, 836, 1162
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 4 cut(s) 243, 294, 397, 960
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 4 cut(s) 18, 736, 745, 799
Vha464I CTTAAG 1 cut(s) 112
VneI GTGCAC 1 cut(s) 1038
VpaK11BI GGWCC 3 cut(s) 54, 484, 497
XapI RAATTY 1 cut(s) 320
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.