Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0021163

Physical Location & Seq

Genomic Coordinates Forward (+)

17499368 .. 17500440

Gene Structure 1073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCACATTCTATATCAGAGTTACTCTGATGCTCAGAAGGCTCTCAGCAAGAATGGGATGCAAATTAACGGGGCACTAATTATAGGCGTGAAGCCGCTGGATCCAATGCAACGCCATGCATTAAATGAAAGGGTCAACAATCAGGGTTTCATGACATTTCCCCCTCAACCGTCCATGAAACATGCAGAGGTGAATGCTTCAAGAGCCCCCCCTCGTCCTTACTATCTTCAAAACGGTAATACCAGTGCGCAGAAATCTGGAGGTGCAATTGCTTCCCCAGCAAAGTCATTGGTGTCCAAAGTCATGGATTTAATGTTTGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

109

Amino Acids

11.79

Weight (kDa)

9.92

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_Nup35	PF05172	1 - 43	5.4e-10	Nup53/35/40-type RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021163)

Species	Orthologous Gene IDs
malus_domestica	MD07G1258000.v1.1 MD16G1217600.v1.1
pyrus_communis	pycom09g12260 pycom17g19570
rosa_multiflora	Rmu_co8162426.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	249
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	2 cut(s)	95, 108
AgsI	TTSAA	2 cut(s)	201, 230
AlwI	GGATC	2 cut(s)	95, 108
AspLEI	GCGC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	208
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	2 cut(s)	19, 48
BpmI	CTGGAG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	47, 58
BseNI	ACTGG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	76, 208
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	46, 57
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	95, 108
BsrI	ACTGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	171, 236
BstDEI	CTNAG	2 cut(s)	33, 44
BstF5I	GGATG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 203, 278
BstNSI	RCATGY	1 cut(s)	185
BstSLI	GKGCMC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	250
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	250
CviAII	CATG	5 cut(s)	116, 151, 175, 182, 304
CviJI	RGCY	3 cut(s)	41, 94, 206
CviKI_1	RGCY	3 cut(s)	41, 94, 206
DdeI	CTNAG	2 cut(s)	33, 44
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	5 cut(s)	119, 154, 178, 185, 307
FaiI	YATR	8 cut(s)	13, 83, 117, 152, 176, 183, 305, 323
FatI	CATG	5 cut(s)	115, 150, 174, 181, 303
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	95
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	95
GsaI	CCCAGC	1 cut(s)	281
GsuI	CTGGAG	1 cut(s)	279
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	5 cut(s)	119, 154, 178, 185, 307
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	18, 28, 36
Hpy188III	TCNNGA	3 cut(s)	151, 201, 258
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	171, 236
HpyCH4V	TGCA	6 cut(s)	4, 61, 109, 119, 185, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 203, 278
HpyF3I	CTNAG	2 cut(s)	33, 44
Hsp92II	CATG	5 cut(s)	119, 154, 178, 185, 307
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	83, 128, 243, 256, 291
LweI	GCATC	2 cut(s)	19, 48
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	218
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	76, 208
MluCI	AATT	3 cut(s)	63, 78, 267
MnlI	CCTC	4 cut(s)	174, 181, 222, 254
Mph1103I	ATGCAT	1 cut(s)	121
MseI	TTAA	3 cut(s)	66, 122, 311
MspA1I	CMGCKG	1 cut(s)	97
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	3 cut(s)	38, 203, 278
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	5 cut(s)	119, 154, 178, 185, 307
NlaIV	GGNNCC	1 cut(s)	102
NsbI	TGCGCA	1 cut(s)	249
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	1 cut(s)	185
PagI	TCATGA	1 cut(s)	150
PctI	GAATGC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	66, 122, 311
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	100
SduI	GDGCHC	2 cut(s)	76, 208
SetI	ASST	2 cut(s)	192, 265
SfaNI	GCATC	2 cut(s)	19, 48
Sse9I	AATT	3 cut(s)	63, 78, 267
SsiI	CCGC	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	171, 236
TasI	AATT	3 cut(s)	63, 78, 267
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	3 cut(s)	66, 122, 311
Tru9I	TTAA	3 cut(s)	66, 122, 311
TscAI	CASTG	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	139, 141, 191
TspRI	CASTG	1 cut(s)	250
XceI	RCATGY	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.