pycom17g22120

Encoded by

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
20519744 .. 20520139
396 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g22120.1

Sequence Viewer

Length: 396 bp
ATGTTTGAAACCACTTGGGAAGTGGTTTCTGAAGGGATGAAAACAAAAATCATTTTTGAATTCTCATTCCCATGGATTTGGAAAAACTGGATCCATCTAGCAAGCGTACCAGAAAGGATAAAGCCTAGCAAACTAAGGAATTTAAAGAAGCTCTATATACGGGGTGGGGAACTTGATAACTTGGATCATGGGGATGCTGAAATGTGGGGAGTAGAAATCTTGCCTCTCAAATACTTGAGGAAATTGCAAATAGGATTGCCAAAGTTGATTTGGAAGAGTTTCCCCATCTTTGTTATTTGGAGAGAAGAAAATGTCATGAGATTGAAGAGGACACATACAGAGAAAACATTCTTTGGGGGTAAAGATTCAGGCTGGGGAACAAGTAAATCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

132

Amino Acids

15.55

Weight (kDa)

9.73

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022572)

Species Orthologous Gene IDs
pyrus_communis pycom17g22120
rosa_samantha Rh1BG314000 Rh1CG328900 Rh1DG345600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 85, 98, 192
AcsI RAATTY 2 cut(s) 59, 139
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 108
AgsI TTSAA 3 cut(s) 8, 59, 325
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AlwI GGATC 3 cut(s) 85, 98, 192
ApoI RAATTY 2 cut(s) 59, 139
Asp700I GAANNNNTTC 2 cut(s) 278, 347
BamHI GGATCC 1 cut(s) 90
BccI CCATC 2 cut(s) 102, 293
BfaI CTAG 2 cut(s) 98, 126
BmiI GGNNCC 1 cut(s) 92
BmsI GCATC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 2 cut(s) 42, 199
BseNI ACTGG 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 372
Bsp143I GATC 2 cut(s) 90, 184
Bsp19I CCATGG 1 cut(s) 71
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 3 cut(s) 85, 98, 192
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 2 cut(s) 90, 184
BssT1I CCWWGG 1 cut(s) 71
Bst6I CTCTTC 2 cut(s) 269, 320
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 42, 199
BstKTI GATC 2 cut(s) 93, 187
BstMBI GATC 2 cut(s) 90, 184
BstX2I RGATCY 1 cut(s) 90
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 2 cut(s) 42, 199
Cac8I GCNNGC 1 cut(s) 103
CciI TCATGA 1 cut(s) 315
Csp6I GTAC 1 cut(s) 107
CviAII CATG 3 cut(s) 72, 188, 316
CviJI RGCY 3 cut(s) 124, 151, 372
CviKI_1 RGCY 3 cut(s) 124, 151, 372
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 134
DpnI GATC 2 cut(s) 92, 186
DpnII GATC 2 cut(s) 90, 184
DraI TTTAAA 1 cut(s) 144
Eam1104I CTCTTC 2 cut(s) 269, 320
EarI CTCTTC 2 cut(s) 269, 320
Eco130I CCWWGG 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 3 cut(s) 75, 191, 319
FaiI YATR 6 cut(s) 73, 156, 158, 189, 317, 336
FatI CATG 3 cut(s) 71, 187, 315
FokI GGATG 2 cut(s) 49, 206
FspBI CTAG 2 cut(s) 98, 126
GsaI CCCAGC 1 cut(s) 376
Hin1II CATG 3 cut(s) 75, 191, 319
HinfI GANTC 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 3 cut(s) 75, 191, 319
Kzo9I GATC 2 cut(s) 90, 184
LpnPI CCDG 4 cut(s) 73, 123, 354, 358
LweI GCATC 1 cut(s) 184
MaeI CTAG 2 cut(s) 98, 126
MalI GATC 2 cut(s) 92, 186
MboI GATC 2 cut(s) 90, 184
MboII GAAGA 3 cut(s) 286, 317, 337
MflI RGATCY 1 cut(s) 90
MluCI AATT 4 cut(s) 59, 139, 242, 391
MnlI CCTC 3 cut(s) 231, 234, 321
MroXI GAANNNNTTC 2 cut(s) 278, 347
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 2 cut(s) 70, 192
NcoI CCATGG 1 cut(s) 71
NdeII GATC 2 cut(s) 90, 184
NlaIII CATG 3 cut(s) 75, 191, 319
NlaIV GGNNCC 1 cut(s) 92
PagI TCATGA 1 cut(s) 315
PdmI GAANNNNTTC 2 cut(s) 278, 347
PfeI GAWTC 1 cut(s) 365
PspFI CCCAGC 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 2 cut(s) 70, 192
SaqAI TTAA 1 cut(s) 143
Sau3AI GATC 2 cut(s) 90, 184
SetI ASST 1 cut(s) 153
SfaNI GCATC 1 cut(s) 184
SmiMI CAYNNNNRTG 2 cut(s) 70, 192
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 4 cut(s) 59, 139, 242, 391
SspMI CTAG 2 cut(s) 98, 126
StyI CCWWGG 1 cut(s) 71
TasI AATT 4 cut(s) 59, 139, 242, 391
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 53
XapI RAATTY 2 cut(s) 59, 139
XcmI CCANNNNNNNNNTGG 2 cut(s) 19, 267
XmnI GAANNNNTTC 2 cut(s) 278, 347
XspI CTAG 2 cut(s) 98, 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.