Rh1DG345600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0022572
Physical Location & Seq
Reverse (-)
56952535 .. 56953410
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG345600.1

Sequence Viewer

Length: 876 bp
ATGAGAAAGGGGTTGATTTTTAATGAAACATATTCAAATGCATCATCCAGAACGGTACTTGTTAATAATTGTAAAATGCACCCTTGGATCCGTCGAATGTTAATCTCTTTGGTCAGTGAGGCTAGGCTCTTCCACTTTGATTCGAAATTCCCAAGGATGCCATCTTATCAGCTGTCAAGTTGTAGGCGTGCATGCTTAGTTTTTGATCACCCGAATCCTCAGGGCGATGCTCTGGATGATCTGCTGACAGTATTCAATGTAACCAAGCACTATCTTGATTTGAAAAAAGAATGGCTGAACAAGTTGAAGAAGGTTGTGGTTCTTCAGCTTGGACGGTGGCAGGACTTGGCTACACATCACATTGAAGTGGAAGATGAAGGATTTCTTGCCCAAGAAGATGGAGGATTTCTGAAAGGTCTGGGGGCTCAGAACAAGCACTTAAAGTATCTTAGCCTCCGAGGGATATCAAGAATTAACCGGCTCCCCTCTTCTATCCTTAATCTTGTCAGTCTTGAAATTCTGGATCTCAGAGCTTGTCACAACTTAGAGAGAATGCCTTCTGACATCTCATCCTTGAGGAAACTCACACATTTGGATTTATCCGAGTGTTACTTGCTGGAAGCCATGCCGAAAGGGATTGAGAAACTCTCTGCACTCCAAGTGCTGAAAGGTTTTCTCATAGGATCTTTGAGAAATACTAGACTTGGTGATCTCGCCAAATTGCAAAATCTAAAGCGACTCGGTATACATTTGGGGAATGACGCTATAGTCCAAGAAGGGGAATTCAAAAGGGTCCTTGACCAAAAGCCCCAAAATGAACCAAAGTTATCTCATTTACCCCAGCAACAGATTTTTATTCCCACTAACCCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

291

Amino Acids

33.29

Weight (kDa)

9.41

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 145 - 254 2e-19 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022572)

Species Orthologous Gene IDs
pyrus_communis pycom17g22120
rosa_samantha Rh1BG314000 Rh1CG328900 Rh1DG345600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 767
AccI GTMKAC 1 cut(s) 745
AclWI GGATC 4 cut(s) 82, 95, 531, 691
AcsI RAATTY 3 cut(s) 146, 516, 782
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 778
AgsI TTSAA 7 cut(s) 36, 256, 283, 307, 365, 515, 787
AluBI AGCT 3 cut(s) 172, 328, 533
AluI AGCT 3 cut(s) 172, 328, 533
AlwI GGATC 4 cut(s) 82, 95, 531, 691
ApoI RAATTY 3 cut(s) 146, 516, 782
Asp700I GAANNNNTTC 2 cut(s) 381, 556
AspS9I GGNCC 1 cut(s) 793
AsuHPI GGTGA 2 cut(s) 200, 719
AsuII TTCGAA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 793
AxyI CCTNAGG 1 cut(s) 219
BamHI GGATCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 427
BccI CCATC 2 cut(s) 169, 392
BclI TGATCA 1 cut(s) 205
BfaI CTAG 2 cut(s) 123, 699
BfmI CTRYAG 1 cut(s) 765
Bme18I GGWCC 1 cut(s) 793
BmgT120I GGNCC 1 cut(s) 793
BmiI GGNNCC 3 cut(s) 89, 482, 794
BmsI GCATC 3 cut(s) 50, 147, 217
BplI GAGNNNNNCTC 2 cut(s) 632, 664
Bpu14I TTCGAA 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 595
BsaJI CCNNGG 3 cut(s) 83, 152, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 778
Bse118I RCCGGY 1 cut(s) 477
Bse21I CCTNAGG 1 cut(s) 219
BseDI CCNNGG 3 cut(s) 83, 152, 457
BseGI GGATG 4 cut(s) 44, 162, 241, 569
BseLI CCNNNNNNNGG 1 cut(s) 778
BseMII CTCAG 3 cut(s) 233, 440, 541
BseYI CCCAGC 1 cut(s) 840
BsgI GTGCAG 1 cut(s) 636
BsiSI CCGG 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 778
BsmI GAATGC 1 cut(s) 558
Bsp119I TTCGAA 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 6 cut(s) 87, 205, 238, 523, 683, 709
BspCNI CTCAG 3 cut(s) 232, 439, 540
BspLI GGNNCC 3 cut(s) 89, 482, 794
BspPI GGATC 4 cut(s) 82, 95, 531, 691
BspQI GCTCTTC 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 477
BssAI RCCGGY 1 cut(s) 477
BssECI CCNNGG 3 cut(s) 83, 152, 457
BssMI GATC 6 cut(s) 87, 205, 238, 523, 683, 709
BssNAI GTATAC 1 cut(s) 746
BssT1I CCWWGG 2 cut(s) 83, 152
Bst1107I GTATAC 1 cut(s) 746
Bst4CI ACNGT 3 cut(s) 55, 250, 336
Bst6I CTCTTC 2 cut(s) 134, 493
BstBI TTCGAA 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 189, 193
BstDEI CTNAG 6 cut(s) 196, 219, 426, 449, 527, 544
BstF5I GGATG 4 cut(s) 44, 162, 241, 569
BstKTI GATC 6 cut(s) 90, 208, 241, 526, 686, 712
BstMBI GATC 6 cut(s) 87, 205, 238, 523, 683, 709
BstNSI RCATGY 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 765
BstX2I RGATCY 3 cut(s) 87, 523, 683
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 3 cut(s) 87, 523, 683
BstZ17I GTATAC 1 cut(s) 746
Bsu36I CCTNAGG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 4 cut(s) 44, 162, 241, 569
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 189, 193
Cfr10I RCCGGY 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 793
CseI GACGC 1 cut(s) 770
Csp6I GTAC 1 cut(s) 56
CviAII CATG 2 cut(s) 192, 625
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 6 cut(s) 196, 219, 426, 449, 527, 544
DpnI GATC 6 cut(s) 89, 207, 240, 525, 685, 711
DpnII GATC 6 cut(s) 87, 205, 238, 523, 683, 709
DrdI GACNNNNNNGTC 1 cut(s) 767
DseDI GACNNNNNNGTC 1 cut(s) 767
Eam1104I CTCTTC 2 cut(s) 134, 493
EarI CTCTTC 2 cut(s) 134, 493
Eco130I CCWWGG 2 cut(s) 83, 152
Eco24I GRGCYC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 793
Eco57I CTGAAG 1 cut(s) 308
Eco81I CCTNAGG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 793
EcoRI GAATTC 1 cut(s) 782
EcoRV GATATC 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 83, 152
EcoT22I ATGCAT 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 427
ErhI CCWWGG 2 cut(s) 83, 152
FaeI CATG 2 cut(s) 195, 628
FaiI YATR 6 cut(s) 31, 193, 626, 680, 746, 767
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 2 cut(s) 191, 624
FbaI TGATCA 1 cut(s) 205
FblI GTMKAC 1 cut(s) 745
FokI GGATG 4 cut(s) 31, 169, 248, 556
FriOI GRGCYC 1 cut(s) 427
FspBI CTAG 2 cut(s) 123, 699
GsaI CCCAGC 1 cut(s) 844
HapII CCGG 1 cut(s) 478
HgaI GACGC 1 cut(s) 770
Hin1II CATG 2 cut(s) 195, 628
HinfI GANTC 3 cut(s) 140, 214, 738
HpaII CCGG 1 cut(s) 478
HphI GGTGA 2 cut(s) 200, 719
Hpy166II GTNNAC 1 cut(s) 746
Hpy188I TCNGA 6 cut(s) 411, 429, 458, 530, 562, 604
Hpy188III TCNNGA 6 cut(s) 48, 233, 275, 468, 512, 521
Hpy8I GTNNAC 1 cut(s) 746
Hpy99I CGWCG 1 cut(s) 96
HpyAV CCTTC 4 cut(s) 304, 371, 567, 770
HpyCH4III ACNGT 3 cut(s) 55, 250, 336
HpyCH4V TGCA 5 cut(s) 41, 79, 191, 653, 724
HpyF3I CTNAG 6 cut(s) 196, 219, 426, 449, 527, 544
Hsp92II CATG 2 cut(s) 195, 628
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 6 cut(s) 87, 205, 238, 523, 683, 709
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 486
LpnPI CCDG 9 cut(s) 61, 206, 218, 326, 404, 491, 506, 602, 854
LweI GCATC 3 cut(s) 50, 147, 217
MaeI CTAG 2 cut(s) 123, 699
MaeIII GTNAC 3 cut(s) 259, 536, 608
MalI GATC 6 cut(s) 89, 207, 240, 525, 685, 711
MboI GATC 6 cut(s) 87, 205, 238, 523, 683, 709
MboII GAAGA 6 cut(s) 121, 314, 319, 383, 407, 480
MflI RGATCY 3 cut(s) 87, 523, 683
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 7 cut(s) 67, 146, 471, 516, 719, 782, 870
MlyI GAGTC 1 cut(s) 732
MnlI CCTC 7 cut(s) 112, 228, 395, 452, 464, 496, 570
Mph1103I ATGCAT 1 cut(s) 43
MroXI GAANNNNTTC 2 cut(s) 381, 556
MseI TTAA 7 cut(s) 21, 63, 101, 440, 474, 498, 874
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 1 cut(s) 478
Mva1269I GAATGC 1 cut(s) 558
NdeII GATC 6 cut(s) 87, 205, 238, 523, 683, 709
NlaIII CATG 2 cut(s) 195, 628
NlaIV GGNNCC 3 cut(s) 89, 482, 794
NmuCI GTSAC 1 cut(s) 536
NsiI ATGCAT 1 cut(s) 43
NspI RCATGY 1 cut(s) 195
NspV TTCGAA 1 cut(s) 143
PaeI GCATGC 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 134
PctI GAATGC 1 cut(s) 558
PdmI GAANNNNTTC 2 cut(s) 381, 556
PfeI GAWTC 2 cut(s) 140, 214
PleI GAGTC 1 cut(s) 732
PpsI GAGTC 1 cut(s) 732
PpuMI RGGWCCY 1 cut(s) 793
Psp5II RGGWCCY 1 cut(s) 793
PspFI CCCAGC 1 cut(s) 840
PspN4I GGNNCC 3 cut(s) 89, 482, 794
PspPI GGNCC 1 cut(s) 793
PspPPI RGGWCCY 1 cut(s) 793
PsuI RGATCY 3 cut(s) 87, 523, 683
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 7 cut(s) 21, 63, 101, 440, 474, 498, 874
Sau3AI GATC 6 cut(s) 87, 205, 238, 523, 683, 709
Sau96I GGNCC 1 cut(s) 793
SchI GAGTC 1 cut(s) 732
SduI GDGCHC 1 cut(s) 427
SetI ASST 6 cut(s) 174, 315, 330, 418, 535, 673
SfaNI GCATC 3 cut(s) 50, 147, 217
SfcI CTRYAG 1 cut(s) 765
SfuI TTCGAA 1 cut(s) 143
SinI GGWCC 1 cut(s) 793
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
SphI GCATGC 1 cut(s) 195
Sse9I AATT 7 cut(s) 67, 146, 471, 516, 719, 782, 870
SspMI CTAG 2 cut(s) 123, 699
StyI CCWWGG 2 cut(s) 83, 152
TaaI ACNGT 3 cut(s) 55, 250, 336
TaqI TCGA 2 cut(s) 94, 143
TasI AATT 7 cut(s) 67, 146, 471, 516, 719, 782, 870
TfiI GAWTC 2 cut(s) 140, 214
Tru1I TTAA 7 cut(s) 21, 63, 101, 440, 474, 498, 874
Tru9I TTAA 7 cut(s) 21, 63, 101, 440, 474, 498, 874
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 3 cut(s) 39, 390, 831
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 793
XapI RAATTY 3 cut(s) 146, 516, 782
XceI RCATGY 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 745
XmnI GAANNNNTTC 2 cut(s) 381, 556
XspI CTAG 2 cut(s) 123, 699
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.