Rh1CG328900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0022572
Physical Location & Seq
Reverse (-)
60286377 .. 60288994
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG328900.1

Sequence Viewer

Length: 759 bp
ATGCCATCTTATCAGCTGTCAAGTTGTAGGCGTGCATGCTTAGTTTTTGATCACCCGAATCCTCAGGGCGATGCTCTGGATGATCTGCTGACAGTATTCAATGTAACCAAGCACTATCTTGATTTGAAAAAAGAATGGCTGAACAAGTTGAAGAAGGTTGTGGTTCTTCAGCTTGGACGGTGGCAGGACTTGGCTACACATCACATTGAAGTGGAAGATGAAGGATTTCTTGCCCAAGAAGATGGAGGATTTCTGAAAGGTCTGGGGGCTCAGAACAAGCACTTAAAGTATCTTAGCCTCCGAGGGATATCAAGAATTAACCGGCTCCCCTCTTCTATCCTTAATCTTGTCAGTCTTGAAATTCTGGATCTCAGAGCTTGTCACAACTTAGAGAGAATGCCTTCTGACATCTCATCCTTGAGGAAACTCACACATTTGGATTTATCCGAGTGTTACTTGCTGGAAGCCATGCCGAAAGGGATTGAGAAACTCTCTGCACTCCAAGTGCTGAAAGAAAAATTGGATCTTCAAGGCATCCCTCTATCAGATGTACCAGAGTGGTTGAAGCCTAGCCAACTAAAAAATTTAAAGAAGCTCTACATAAGGGGTGGGGAACTTGCTAGCTTGGCTCATGGGGAAACCGAGGGGTGGACAGTGAAAATCTTGCGTCTCAAGTACTTGAAGAAATTGAAAATAGAATCACCCAGCTTGGAGGAAGCTTTTCCTTGTCTCCAACACTCAGAGGTTCAACTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

252

Amino Acids

28.65

Weight (kDa)

8.19

Isoelectric Point (pI)

61.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 93 - 172 1.3e-14 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022572)

Species Orthologous Gene IDs
pyrus_communis pycom17g22120
rosa_samantha Rh1BG314000 Rh1CG328900 Rh1DG345600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 375, 531
AcsI RAATTY 2 cut(s) 360, 583
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 2 cut(s) 552, 677
AfiI CCNNNNNNNGG 1 cut(s) 648
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AluBI AGCT 7 cut(s) 16, 172, 377, 595, 624, 708, 719
AluI AGCT 7 cut(s) 16, 172, 377, 595, 624, 708, 719
Alw26I GTCTC 2 cut(s) 674, 734
AlwI GGATC 2 cut(s) 375, 531
ApoI RAATTY 2 cut(s) 360, 583
Asp700I GAANNNNTTC 3 cut(s) 225, 400, 720
AsuHPI GGTGA 2 cut(s) 44, 693
AsuNHI GCTAGC 1 cut(s) 620
AxyI CCTNAGG 1 cut(s) 63
BanII GRGCYC 1 cut(s) 271
BccI CCATC 2 cut(s) 13, 236
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 2 cut(s) 674, 734
BfaI CTAG 2 cut(s) 570, 621
BmcAI AGTACT 1 cut(s) 677
BmiI GGNNCC 1 cut(s) 326
BmsI GCATC 2 cut(s) 61, 543
BmtI GCTAGC 1 cut(s) 624
BplI GAGNNNNNCTC 2 cut(s) 476, 508
BpuEI CTTGAG 2 cut(s) 439, 656
BsaJI CCNNGG 2 cut(s) 301, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 648
Bse118I RCCGGY 1 cut(s) 321
Bse21I CCTNAGG 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 301, 642
BseGI GGATG 3 cut(s) 85, 413, 534
BseLI CCNNNNNNNGG 1 cut(s) 648
BseMII CTCAG 4 cut(s) 77, 284, 385, 753
BseYI CCCAGC 1 cut(s) 704
BsgI GTGCAG 1 cut(s) 480
BsiSI CCGG 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 648
BsmAI GTCTC 2 cut(s) 674, 734
BsmBI CGTCTC 1 cut(s) 674
BsmI GAATGC 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 4 cut(s) 49, 82, 367, 523
BspCNI CTCAG 4 cut(s) 76, 283, 384, 752
BspHI TCATGA 1 cut(s) 755
BspLI GGNNCC 1 cut(s) 326
BspOI GCTAGC 1 cut(s) 624
BspPI GGATC 2 cut(s) 375, 531
BsrFI RCCGGY 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 301, 642
BssMI GATC 4 cut(s) 49, 82, 367, 523
Bst4CI ACNGT 4 cut(s) 94, 180, 655, 753
Bst6I CTCTTC 1 cut(s) 337
BstC8I GCNNGC 3 cut(s) 33, 37, 622
BstDEI CTNAG 7 cut(s) 40, 63, 270, 293, 371, 388, 739
BstF5I GGATG 3 cut(s) 85, 413, 534
BstKTI GATC 4 cut(s) 52, 85, 370, 526
BstMAI GTCTC 2 cut(s) 674, 734
BstMBI GATC 4 cut(s) 49, 82, 367, 523
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNSI RCATGY 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 367, 523
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 2 cut(s) 367, 523
Bsu36I CCTNAGG 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 3 cut(s) 85, 413, 534
BtsIMutI CAGTG 1 cut(s) 660
Cac8I GCNNGC 3 cut(s) 33, 37, 622
CciI TCATGA 1 cut(s) 755
Cfr10I RCCGGY 1 cut(s) 321
CseI GACGC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 551, 676
CviAII CATG 4 cut(s) 36, 469, 632, 756
CviQI GTAC 2 cut(s) 551, 676
DdeI CTNAG 7 cut(s) 40, 63, 270, 293, 371, 388, 739
DpnI GATC 4 cut(s) 51, 84, 369, 525
DpnII GATC 4 cut(s) 49, 82, 367, 523
DraI TTTAAA 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 271
Eco32I GATATC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 63
EcoRV GATATC 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 674
FaeI CATG 4 cut(s) 39, 472, 635, 759
FaiI YATR 5 cut(s) 37, 470, 602, 633, 757
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 4 cut(s) 35, 468, 631, 755
FbaI TGATCA 1 cut(s) 49
FokI GGATG 3 cut(s) 92, 400, 521
FriOI GRGCYC 1 cut(s) 271
FspBI CTAG 2 cut(s) 570, 621
GsaI CCCAGC 1 cut(s) 708
HapII CCGG 1 cut(s) 322
HgaI GACGC 1 cut(s) 656
Hin1II CATG 4 cut(s) 39, 472, 635, 759
HindIII AAGCTT 1 cut(s) 717
HinfI GANTC 2 cut(s) 58, 698
HpaII CCGG 1 cut(s) 322
HphI GGTGA 2 cut(s) 44, 693
Hpy166II GTNNAC 1 cut(s) 651
Hpy188I TCNGA 8 cut(s) 255, 273, 302, 374, 406, 448, 547, 742
Hpy188III TCNNGA 6 cut(s) 77, 119, 312, 356, 365, 756
Hpy8I GTNNAC 1 cut(s) 651
HpyAV CCTTC 3 cut(s) 148, 215, 411
HpyCH4III ACNGT 4 cut(s) 94, 180, 655, 753
HpyCH4V TGCA 2 cut(s) 35, 497
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpyF3I CTNAG 7 cut(s) 40, 63, 270, 293, 371, 388, 739
Hsp92II CATG 4 cut(s) 39, 472, 635, 759
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 4 cut(s) 49, 82, 367, 523
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 9 cut(s) 50, 62, 170, 248, 335, 350, 446, 567, 718
LweI GCATC 2 cut(s) 61, 543
MaeI CTAG 2 cut(s) 570, 621
MaeIII GTNAC 3 cut(s) 103, 380, 452
MalI GATC 4 cut(s) 51, 84, 369, 525
MboI GATC 4 cut(s) 49, 82, 367, 523
MboII GAAGA 7 cut(s) 158, 163, 227, 251, 324, 518, 694
MflI RGATCY 2 cut(s) 367, 523
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 5 cut(s) 315, 360, 518, 583, 686
MmeI TCCRAC 1 cut(s) 757
MroXI GAANNNNTTC 3 cut(s) 225, 400, 720
MseI TTAA 4 cut(s) 284, 318, 342, 587
MslI CAYNNNNRTG 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 402
MwoI GCNNNNNNNGC 1 cut(s) 626
NdeII GATC 4 cut(s) 49, 82, 367, 523
NheI GCTAGC 1 cut(s) 620
NlaIII CATG 4 cut(s) 39, 472, 635, 759
NlaIV GGNNCC 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 39
PaeI GCATGC 1 cut(s) 39
PagI TCATGA 1 cut(s) 755
PctI GAATGC 1 cut(s) 402
PdmI GAANNNNTTC 3 cut(s) 225, 400, 720
PfeI GAWTC 2 cut(s) 58, 698
PspFI CCCAGC 1 cut(s) 704
PspN4I GGNNCC 1 cut(s) 326
PsuI RGATCY 2 cut(s) 367, 523
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 2 cut(s) 552, 677
RsaNI GTAC 2 cut(s) 551, 676
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 4 cut(s) 284, 318, 342, 587
Sau3AI GATC 4 cut(s) 49, 82, 367, 523
ScaI AGTACT 1 cut(s) 677
SduI GDGCHC 1 cut(s) 271
SfaNI GCATC 2 cut(s) 61, 543
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 2 cut(s) 418, 671
SmoI CTYRAG 2 cut(s) 418, 671
SphI GCATGC 1 cut(s) 39
Sse9I AATT 5 cut(s) 315, 360, 518, 583, 686
SspMI CTAG 2 cut(s) 570, 621
TaaI ACNGT 4 cut(s) 94, 180, 655, 753
TasI AATT 5 cut(s) 315, 360, 518, 583, 686
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 2 cut(s) 58, 698
Tru1I TTAA 4 cut(s) 284, 318, 342, 587
Tru9I TTAA 4 cut(s) 284, 318, 342, 587
TscAI CASTG 1 cut(s) 660
TseFI GTSAC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 660
XapI RAATTY 2 cut(s) 360, 583
XceI RCATGY 1 cut(s) 39
XmnI GAANNNNTTC 3 cut(s) 225, 400, 720
XspI CTAG 2 cut(s) 570, 621
ZrmI AGTACT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.