pycom420g00220

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
Physical Location & Seq
Forward (+)
203625 .. 204023
399 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGGATACCCCTATAAGTGGGTACATAATTGCACTCTTTGATTGTTTGGCTGTGTGCAGGGAGATGATCCAGCACAGGCATTATACACAGAAAGTTGACGTTTATAGCTTTGGGATAGTTCTTTGGGAACTTATAACAGGGATGCTTCCATTCCAGAACATGACAGCGGTACAGGCAGCATTTGCAGTTGTGAATAAGGGTGTCCGCCCTAACATTCCGAATGACTGCTTACCTGTTCTTTGTGAGATCATGACGAGATGTTGGGATGCAAACCCTGACGTGAGGCCATCCTTCACTGAAGTCGTGAGAATGCTCGAGCATGCAGAGACAGAGATCATGACGACTGTTCGGAAGGCCCGGTTCAGGTGTTGCATTACCCAACCAATGACAACGGACTGA

Protein Analysis

133

Amino Acids

15.1

Weight (kDa)

5.88

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 20 - 105 1.8e-22 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 21 - 103 3.5e-11 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022208)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00150
malus_domestica MD00G1091400.v1.1
pyrus_communis pycom420g00220
rosa_wichuraiana Rw0G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AciI CCGC 2 cut(s) 167, 205
AclWI GGATC 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 2 cut(s) 23, 171
AfiI CCNNNNNNNGG 2 cut(s) 17, 363
AjiI CACGTC 1 cut(s) 280
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 2 cut(s) 284, 354
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 355
AsuC2I CCSGG 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 314
BbvI GCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 295
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 320
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 314
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 2 cut(s) 132, 256
BpuMI CCSGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 363
BseGI GGATG 3 cut(s) 147, 271, 287
BseLI CCNNNNNNNGG 2 cut(s) 17, 363
BseXI GCAGC 1 cut(s) 188
BsgI GTGCAG 1 cut(s) 76
BshFI GGCC 2 cut(s) 286, 356
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 2 cut(s) 17, 363
BsmAI GTCTC 1 cut(s) 320
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 2 cut(s) 286, 356
BsoBI CYCGRG 1 cut(s) 314
Bsp143I GATC 3 cut(s) 66, 246, 333
BspACI CCGC 2 cut(s) 167, 205
BspANI GGCC 2 cut(s) 286, 356
BspHI TCATGA 2 cut(s) 249, 336
BspPI GGATC 1 cut(s) 61
BssMI GATC 3 cut(s) 66, 246, 333
Bst4CI ACNGT 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 321
BstF5I GGATG 3 cut(s) 147, 271, 287
BstKTI GATC 3 cut(s) 69, 249, 336
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 3 cut(s) 66, 246, 333
BstMWI GCNNNNNNNGC 2 cut(s) 173, 182
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 188
BsuRI GGCC 2 cut(s) 286, 356
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 3 cut(s) 147, 271, 287
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 321
CciI TCATGA 2 cut(s) 249, 336
Cfr13I GGNCC 1 cut(s) 355
Csp6I GTAC 2 cut(s) 22, 170
CviAII CATG 4 cut(s) 160, 250, 320, 337
CviJI RGCY 4 cut(s) 50, 108, 286, 356
CviKI_1 RGCY 4 cut(s) 50, 108, 286, 356
CviQI GTAC 2 cut(s) 22, 170
DpnI GATC 3 cut(s) 68, 248, 335
DpnII GATC 3 cut(s) 66, 246, 333
EciI GGCGGA 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 314
FaeI CATG 4 cut(s) 163, 253, 323, 340
FaiI YATR 9 cut(s) 14, 26, 84, 105, 134, 161, 251, 321, 338
FatI CATG 4 cut(s) 159, 249, 319, 336
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 3 cut(s) 154, 274, 278
Fsp4HI GCNGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 286, 356
HapII CCGG 1 cut(s) 358
Hin1II CATG 4 cut(s) 163, 253, 323, 340
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HpaII CCGG 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 219, 351
Hpy188III TCNNGA 4 cut(s) 154, 250, 304, 337
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 301, 346
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 2 cut(s) 99, 279
HpyCH4V TGCA 6 cut(s) 32, 57, 185, 269, 323, 372
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 182
HpySE526I ACGT 2 cut(s) 99, 279
Hsp92II CATG 4 cut(s) 163, 253, 323, 340
Kzo9I GATC 3 cut(s) 66, 246, 333
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 2 cut(s) 132, 256
MaeII ACGT 2 cut(s) 99, 279
MalI GATC 3 cut(s) 68, 248, 335
MboI GATC 3 cut(s) 66, 246, 333
MluCI AATT 1 cut(s) 27
MnlI CCTC 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 358
Mva1269I GAATGC 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 173, 182
NciI CCSGG 1 cut(s) 358
NdeII GATC 3 cut(s) 66, 246, 333
NlaIII CATG 4 cut(s) 163, 253, 323, 340
NspI RCATGY 1 cut(s) 323
PaeI GCATGC 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 314
PagI TCATGA 2 cut(s) 249, 336
PctI GAATGC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 178
PsiI TTATAA 1 cut(s) 134
PspPI GGNCC 1 cut(s) 355
PspXI VCTCGAGB 1 cut(s) 314
RsaI GTAC 2 cut(s) 23, 171
RsaNI GTAC 2 cut(s) 22, 170
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 66, 246, 333
Sau96I GGNCC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 358
SetI ASST 5 cut(s) 102, 110, 235, 282, 368
SfaNI GCATC 2 cut(s) 132, 256
Sfr274I CTCGAG 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SphI GCATGC 1 cut(s) 323
Sse9I AATT 1 cut(s) 27
SsiI CCGC 2 cut(s) 167, 205
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 2 cut(s) 102, 282
TaqI TCGA 1 cut(s) 315
TasI AATT 1 cut(s) 27
TscAI CASTG 1 cut(s) 301
TseI GCWGC 1 cut(s) 176
TspRI CASTG 1 cut(s) 301
XceI RCATGY 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.