pycom72g00030

3-oxoacyl- acyl-carrier-protein reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000072
OG0024711
Physical Location & Seq
Forward (+)
31190 .. 31539
350 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom72g00030.2

Sequence Viewer

Length: 204 bp
ATGGCGGCCTCGATCGCGTTCAACACCGTTGGATCTCCGGCGCGACTCTCCCGCCAATTCTCCCACCCGCGAAGCTCCTATCCGCGTCTCGGCGGGCTCCGACTGCGCCACGCCTCTCCGGCCATGTTTTCGAGCTCCTTGTCTTCCTCCTCTGGCTCTGCCGAAGGTGGAGGCTCCGGTGGTTATCGTCACCGGAGCTTCTAG

Protein Analysis

68

Amino Acids

6.99

Weight (kDa)

12.0

Isoelectric Point (pI)

77.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024711)

Species Orthologous Gene IDs
pyrus_communis pycom72g00030
rosa_multiflora Rmu_sc0022756.1_g000001 Rmu_sc0040101.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 17, 43, 70, 85
AciI CCGC 5 cut(s) 5, 52, 68, 83, 93
AclWI GGATC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 3 cut(s) 75, 135, 198
AluI AGCT 3 cut(s) 75, 135, 198
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 40
AoxI GGCC 2 cut(s) 6, 120
AspLEI GCGC 2 cut(s) 43, 108
AsuHPI GGTGA 1 cut(s) 182
BanII GRGCYC 2 cut(s) 99, 137
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 202
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 98, 175
BpiI GAAGAC 1 cut(s) 135
BsaWI WCCGGW 2 cut(s) 176, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 139
Bsh1236I CGCG 4 cut(s) 17, 43, 70, 85
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 8, 122
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 4 cut(s) 38, 119, 177, 193
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 2 cut(s) 8, 122
Bsp1286I GDGCHC 2 cut(s) 99, 137
Bsp143I GATC 2 cut(s) 12, 32
BspACI CCGC 5 cut(s) 5, 52, 68, 83, 93
BspANI GGCC 2 cut(s) 8, 122
BspFNI CGCG 4 cut(s) 17, 43, 70, 85
BspLI GGNNCC 2 cut(s) 98, 175
BspPI GGATC 1 cut(s) 40
BssMI GATC 2 cut(s) 12, 32
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 95
BstFNI CGCG 4 cut(s) 17, 43, 70, 85
BstHHI GCGC 2 cut(s) 43, 108
BstKTI GATC 2 cut(s) 15, 35
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 12, 32
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 14, 103, 119
BstUI CGCG 4 cut(s) 17, 43, 70, 85
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 2 cut(s) 8, 122
Cac8I GCNNGC 1 cut(s) 95
CfoI GCGC 2 cut(s) 43, 108
CseI GACGC 1 cut(s) 74
CviAII CATG 1 cut(s) 124
CviJI RGCY 8 cut(s) 8, 75, 97, 122, 135, 156, 174, 198
CviKI_1 RGCY 8 cut(s) 8, 75, 97, 122, 135, 156, 174, 198
DpnI GATC 2 cut(s) 14, 34
DpnII GATC 2 cut(s) 12, 32
EaeI YGGCCR 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 135
Eco24I GRGCYC 2 cut(s) 99, 137
Eco53kI GAGCTC 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 135
EcoT38I GRGCYC 2 cut(s) 99, 137
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 1 cut(s) 127
FaiI YATR 1 cut(s) 125
FatI CATG 1 cut(s) 123
FauI CCCGC 3 cut(s) 59, 75, 86
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 2 cut(s) 99, 137
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 202
GlaI GCGC 2 cut(s) 42, 107
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 8, 122
HapII CCGG 4 cut(s) 38, 119, 177, 193
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 43, 108
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 2 cut(s) 41, 106
HinP1I GCGC 2 cut(s) 41, 106
HinfI GANTC 1 cut(s) 45
HpaII CCGG 4 cut(s) 38, 119, 177, 193
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 103, 119
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 2 cut(s) 41, 106
Kzo9I GATC 2 cut(s) 12, 32
LmnI GCTCC 5 cut(s) 80, 102, 140, 179, 195
LpnPI CCDG 4 cut(s) 51, 132, 138, 190
MaeI CTAG 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 14, 34
MboI GATC 2 cut(s) 12, 32
MboII GAAGA 1 cut(s) 135
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 2 cut(s) 99, 137
MluCI AATT 1 cut(s) 56
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 2 cut(s) 10, 124
MnlI CCTC 5 cut(s) 19, 124, 157, 160, 164
MspI CCGG 4 cut(s) 38, 119, 177, 193
MvnI CGCG 4 cut(s) 17, 43, 70, 85
MwoI GCNNNNNNNGC 3 cut(s) 14, 103, 119
NdeII GATC 2 cut(s) 12, 32
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 2 cut(s) 98, 175
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 7
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp124BI GAGCTC 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 98, 175
PsuI RGATCY 1 cut(s) 32
PvuI CGATCG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 137
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 12, 32
SchI GAGTC 1 cut(s) 39
SduI GDGCHC 2 cut(s) 99, 137
SetI ASST 4 cut(s) 77, 137, 169, 200
Sse9I AATT 1 cut(s) 56
SsiI CCGC 5 cut(s) 5, 52, 68, 83, 93
SspMI CTAG 1 cut(s) 202
SstI GAGCTC 1 cut(s) 137
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 11, 131
TasI AATT 1 cut(s) 56
TauI GCSGC 1 cut(s) 8
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
XspI CTAG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.