Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040101.1

Orthogroup ID

OG0024711

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 545

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 359 bp

atgaaagcaggacttccaaaaacggaacgtcgtttttgtcgtccacatacacaaagcattaccctctggaacgccaaagagcagagtagcgcagtgttctcaatggcggccacgatcgcctttaacgccgtcggaactccggcgcgcctctcccgccaattgtctcacccgagccgccgtccctatccgcttctcgccggactccgactccgtcaggccgtcccggcgcgatactcgaactcagtatcttcgtcctctggctcaggaattagggctcagtctgtcgccgtggagtcactgagcgctgctacagctccgaaagtggaggctcctgtggttattgtcaccggagcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

119

Amino Acids

12.58

Weight (kDa)

11.6

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024711)

Species	Orthologous Gene IDs
pyrus_communis	pycom72g00030
rosa_multiflora	Rmu_sc0022756.1_g000001 Rmu_sc0040101.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	145, 229
AciI	CCGC	4 cut(s)	107, 154, 175, 188
AcoI	YGGCCR	1 cut(s)	108
AfeI	AGCGCT	1 cut(s)	304
AluBI	AGCT	2 cut(s)	314, 353
AluI	AGCT	2 cut(s)	314, 353
Alw26I	GTCTC	1 cut(s)	168
Ama87I	CYCGRG	1 cut(s)	169
Aor51HI	AGCGCT	1 cut(s)	304
AoxI	GGCC	2 cut(s)	108, 216
ApeKI	GCWGC	1 cut(s)	305
AscI	GGCGCGCC	1 cut(s)	143
AspLEI	GCGC	5 cut(s)	92, 145, 147, 229, 305
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	158, 337
AvaI	CYCGRG	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	292
BceAI	ACGGC	4 cut(s)	113, 162, 203, 272
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	306
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	3 cut(s)	108, 175, 306
BlsI	GCNGC	3 cut(s)	109, 176, 307
Bme1390I	CCNGG	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
BseDI	CCNNGG	1 cut(s)	288
BseMII	CTCAG	4 cut(s)	255, 276, 290, 290
BsePI	GCGCGC	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	292
Bsh1236I	CGCG	2 cut(s)	145, 229
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	110, 218
BsiEI	CGRYCG	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	4 cut(s)	140, 198, 224, 348
BslFI	GGGAC	2 cut(s)	165, 206
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	2 cut(s)	165, 206
BsnI	GGCC	2 cut(s)	110, 218
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	4 cut(s)	107, 154, 175, 188
BspANI	GGCC	2 cut(s)	110, 218
BspCNI	CTCAG	4 cut(s)	254, 275, 289, 291
BspFNI	CGCG	2 cut(s)	145, 229
BspLI	GGNNCC	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	288
BssHII	GCGCGC	1 cut(s)	143
BssMI	GATC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	4 cut(s)	241, 262, 276, 299
BstDSI	CCRYGG	1 cut(s)	288
BstFNI	CGCG	2 cut(s)	145, 229
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	5 cut(s)	92, 145, 147, 229, 305
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	114
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 125, 153, 224, 311
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	2 cut(s)	145, 229
BstV1I	GCAGC	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	110, 218
BtgI	CCRYGG	1 cut(s)	288
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 296
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	5 cut(s)	92, 145, 147, 229, 305
CviJI	RGCY	8 cut(s)	110, 174, 218, 261, 275, 314, 329, 353
CviKI_1	RGCY	8 cut(s)	110, 174, 218, 261, 275, 314, 329, 353
DdeI	CTNAG	4 cut(s)	241, 262, 276, 299
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	277
Eco47III	AGCGCT	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	277
FaiI	YATR	1 cut(s)	48
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	2 cut(s)	165, 206
FauI	CCCGC	1 cut(s)	161
Fnu4HI	GCNGC	3 cut(s)	108, 175, 306
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	108, 175, 306
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	5 cut(s)	91, 144, 146, 228, 304
GluI	GCNGC	3 cut(s)	108, 175, 306
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	110, 218
HapII	CCGG	4 cut(s)	140, 198, 224, 348
HhaI	GCGC	5 cut(s)	92, 145, 147, 229, 305
Hin6I	GCGC	5 cut(s)	90, 143, 145, 227, 303
HinP1I	GCGC	5 cut(s)	90, 143, 145, 227, 303
HinfI	GANTC	3 cut(s)	201, 207, 293
HpaII	CCGG	4 cut(s)	140, 198, 224, 348
HphI	GGTGA	2 cut(s)	158, 337
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	134, 206, 318
Hpy188III	TCNNGA	2 cut(s)	67, 264
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	2 cut(s)	33, 134
HpyCH4IV	ACGT	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 125, 153, 224, 311
HpyF3I	CTNAG	4 cut(s)	241, 262, 276, 299
HpySE526I	ACGT	1 cut(s)	28
HspAI	GCGC	5 cut(s)	90, 143, 145, 227, 303
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	3 cut(s)	319, 334, 350
LpnPI	CCDG	8 cut(s)	52, 153, 200, 211, 237, 243, 249, 345
Lsp1109I	GCAGC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	2 cut(s)	294, 343
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	240
MfeI	CAATTG	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	2 cut(s)	158, 267
MlyI	GAGTC	3 cut(s)	195, 201, 302
MmeI	TCCRAC	2 cut(s)	112, 229
MnlI	CCTC	4 cut(s)	74, 158, 265, 319
MseI	TTAA	1 cut(s)	123
MspI	CCGG	4 cut(s)	140, 198, 224, 348
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	158
MvnI	CGCG	2 cut(s)	145, 229
MwoI	GCNNNNNNNGC	5 cut(s)	116, 125, 153, 224, 311
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	114
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	294, 343
PalAI	GGCGCGCC	1 cut(s)	143
PauI	GCGCGC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PflFI	GACNNNGTC	1 cut(s)	210
PkrI	GCNGC	3 cut(s)	109, 176, 307
Ple19I	CGATCG	1 cut(s)	117
PleI	GAGTC	3 cut(s)	195, 201, 301
PpsI	GAGTC	3 cut(s)	195, 201, 301
PspN4I	GGNNCC	1 cut(s)	330
PsyI	GACNNNGTC	1 cut(s)	210
PteI	GCGCGC	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	108, 175, 306
Sau3AI	GATC	1 cut(s)	114
SchI	GAGTC	3 cut(s)	195, 201, 302
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	3 cut(s)	31, 316, 355
SfcI	CTRYAG	1 cut(s)	309
SgsI	GGCGCGCC	1 cut(s)	143
Sse9I	AATT	2 cut(s)	158, 267
SsiI	CCGC	4 cut(s)	107, 154, 175, 188
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	158, 267
TauI	GCSGC	2 cut(s)	110, 177
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	99, 303
TseFI	GTSAC	2 cut(s)	294, 343
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	2 cut(s)	294, 343
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	38, 200
TspRI	CASTG	2 cut(s)	99, 303
Tth111I	GACNNNGTC	1 cut(s)	210
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.