Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022756.1

Orthogroup ID

OG0024711

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1010

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022756.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 391 bp

gttctcaatggcggccacgatcgcctttaacgccgtcggaactccggcgcgcctctcccgccaattgtctcacccgagccgccgtccctatccgcttctcgccggactccgactccgtcaggccgtcccggcgcgatactcgaactcagtatcttcgtcctctggcggctcaggaattagggctcattctgtcgccgtggagtcactgagcgctgctacagctccgaaagtggaggctcctgtggttattgtcaccggagcttctagaggaattggcaaggctgttgccctcgctttcggaaaatctggttgtaaggtgcttgtaaactatgcaaggtcatataaggaagccgaacaagtttccaaggaggtacctttctttgtaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko00333 ko00780 ko01040 ko01100 ko01130 ko01212 map00061 map00333 map00780 map01040 map01100 map01130 map01212

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

129

Amino Acids

13.45

Weight (kDa)

10.75

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024711)

Species	Orthologous Gene IDs
pyrus_communis	pycom72g00030
rosa_multiflora	Rmu_sc0022756.1_g000001 Rmu_sc0040101.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	371
AccII	CGCG	2 cut(s)	50, 134
AciI	CCGC	5 cut(s)	12, 59, 80, 93, 166
AcoI	YGGCCR	1 cut(s)	13
AfaI	GTAC	1 cut(s)	373
AfeI	AGCGCT	1 cut(s)	212
AluBI	AGCT	2 cut(s)	222, 261
AluI	AGCT	2 cut(s)	222, 261
Alw26I	GTCTC	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	74
Aor51HI	AGCGCT	1 cut(s)	212
AoxI	GGCC	2 cut(s)	13, 121
ApeKI	GCWGC	1 cut(s)	213
AscI	GGCGCGCC	1 cut(s)	48
Asp718I	GGTACC	1 cut(s)	371
AspLEI	GCGC	4 cut(s)	50, 52, 134, 213
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	63, 245
AvaI	CYCGRG	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	200
BceAI	ACGGC	4 cut(s)	18, 67, 108, 180
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	265
BfmI	CTRYAG	1 cut(s)	217
BfoI	RGCGCY	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	129
BisI	GCNGC	4 cut(s)	13, 80, 167, 214
BlsI	GCNGC	4 cut(s)	14, 81, 168, 215
Bme1390I	CCNGG	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	238, 373
BmrFI	CCNGG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	196, 364
BsaWI	WCCGGW	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
BseDI	CCNNGG	2 cut(s)	196, 364
BseMII	CTCAG	3 cut(s)	160, 184, 198
BsePI	GCGCGC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	50, 134
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	15, 123
BshNI	GGYRCC	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	4 cut(s)	45, 103, 129, 256
BslFI	GGGAC	2 cut(s)	70, 111
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	2 cut(s)	70, 111
BsnI	GGCC	2 cut(s)	15, 123
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	5 cut(s)	12, 59, 80, 93, 166
BspANI	GGCC	2 cut(s)	15, 123
BspCNI	CTCAG	3 cut(s)	159, 183, 199
BspFNI	CGCG	2 cut(s)	50, 134
BspLI	GGNNCC	2 cut(s)	238, 373
BspT107I	GGYRCC	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	196, 364
BssHII	GCGCGC	1 cut(s)	48
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	146, 170, 207
BstDSI	CCRYGG	1 cut(s)	196
BstFNI	CGCG	2 cut(s)	50, 134
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	4 cut(s)	50, 52, 134, 213
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	19
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 30, 58, 129, 219
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	217
BstUI	CGCG	2 cut(s)	50, 134
BstV1I	GCAGC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	15, 123
BtgI	CCRYGG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	50
CfoI	GCGC	4 cut(s)	50, 52, 134, 213
Csp6I	GTAC	1 cut(s)	372
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	3 cut(s)	146, 170, 207
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	185
Eco47III	AGCGCT	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	364
FaiI	YATR	3 cut(s)	331, 341, 343
FaqI	GGGAC	2 cut(s)	70, 111
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	13, 80, 167, 214
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	4 cut(s)	13, 80, 167, 214
FspBI	CTAG	1 cut(s)	265
GlaI	GCGC	4 cut(s)	49, 51, 133, 212
GluI	GCNGC	4 cut(s)	13, 80, 167, 214
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	15, 123
HapII	CCGG	4 cut(s)	45, 103, 129, 256
HhaI	GCGC	4 cut(s)	50, 52, 134, 213
Hin6I	GCGC	4 cut(s)	48, 50, 132, 211
HinP1I	GCGC	4 cut(s)	48, 50, 132, 211
HinfI	GANTC	3 cut(s)	106, 112, 201
HpaII	CCGG	4 cut(s)	45, 103, 129, 256
HphI	GGTGA	2 cut(s)	63, 245
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	4 cut(s)	39, 111, 226, 300
Hpy188III	TCNNGA	2 cut(s)	172, 265
Hpy8I	GTNNAC	1 cut(s)	326
Hpy99I	CGWCG	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 30, 58, 129, 219
HpyF3I	CTNAG	3 cut(s)	146, 170, 207
HspAI	GCGC	4 cut(s)	48, 50, 132, 211
KpnI	GGTACC	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	3 cut(s)	227, 242, 258
LpnPI	CCDG	9 cut(s)	58, 105, 116, 142, 148, 157, 253, 269, 292
Lsp1109I	GCAGC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	202, 251
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	145
MfeI	CAATTG	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	3 cut(s)	63, 175, 271
MlyI	GAGTC	3 cut(s)	100, 106, 210
MmeI	TCCRAC	2 cut(s)	17, 134
MnlI	CCTC	6 cut(s)	63, 170, 227, 261, 300, 362
MseI	TTAA	1 cut(s)	28
MspI	CCGG	4 cut(s)	45, 103, 129, 256
MspR9I	CCNGG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	63
MvnI	CGCG	2 cut(s)	50, 134
MwoI	GCNNNNNNNGC	5 cut(s)	21, 30, 58, 129, 219
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	19
NlaIV	GGNNCC	2 cut(s)	238, 373
NmuCI	GTSAC	2 cut(s)	202, 251
PalAI	GGCGCGCC	1 cut(s)	48
PauI	GCGCGC	1 cut(s)	48
PflFI	GACNNNGTC	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	14, 81, 168, 215
Ple19I	CGATCG	1 cut(s)	22
PleI	GAGTC	3 cut(s)	100, 106, 209
PpsI	GAGTC	3 cut(s)	100, 106, 209
PspN4I	GGNNCC	2 cut(s)	238, 373
PsyI	GACNNNGTC	1 cut(s)	115
PteI	GCGCGC	1 cut(s)	48
PvuI	CGATCG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	28
SatI	GCNGC	4 cut(s)	13, 80, 167, 214
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	3 cut(s)	100, 106, 210
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	6 cut(s)	224, 263, 319, 339, 373, 377
SfcI	CTRYAG	1 cut(s)	217
SgsI	GGCGCGCC	1 cut(s)	48
Sse9I	AATT	3 cut(s)	63, 175, 271
SsiI	CCGC	5 cut(s)	12, 59, 80, 93, 166
SspMI	CTAG	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	364
TaqI	TCGA	1 cut(s)	141
TasI	AATT	3 cut(s)	63, 175, 271
TauI	GCSGC	3 cut(s)	15, 82, 169
Tru1I	TTAA	1 cut(s)	28
Tru9I	TTAA	1 cut(s)	28
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	2 cut(s)	202, 251
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	2 cut(s)	202, 251
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	211
Tth111I	GACNNNGTC	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	264
XspI	CTAG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.