Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000072

Orthogroup ID

OG0022326

Physical Location & Seq

Genomic Coordinates Forward (+)

39516 .. 39722

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom72g00080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGCTGGGATAGAGGGAGGAAGCATCAGGGCAACTGTGCTGATTGAAACACTTCCAGCTGTGTTTCAAATGAATGAGATCCTTTATGAGCCGAGGGACCACTCTGTTGACTCAACTGTGGAAGATGGGATTACATTTTCAGCTATGTCAAAACCTTCCAGGCTCACTCCGACCGTCTCTTGCCAGACCGTGTTCTGGTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004474 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005975 GO:0006081 GO:0006082 GO:0006097 GO:0008150 GO:0008152 GO:0009514 GO:0009987 GO:0016740 GO:0016746 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046487 GO:0046912 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00620 ko00630 ko01100 ko01110 ko01120 ko01200 map00620 map00630 map01100 map01110 map01120 map01200

Pfam Domains

Protein Families

Malate_synthase

Protein Analysis

69

Amino Acids

7.42

Weight (kDa)

4.55

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_TIM-barrel	PF01274	1 - 36	2e-10	Malate synthase, TIM barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022326)

Species	Orthologous Gene IDs
malus_domestica	MD14G1161700.v1.1
pyrus_communis	pycom14g13470 pycom72g00080
rosa_laevigata	RLG00000004559

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	47, 68
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	59, 143
AluI	AGCT	2 cut(s)	59, 143
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	73
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseYI	CCCAGC	1 cut(s)	5
Bsh1285I	CGRYCG	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	181
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	4 cut(s)	37, 118, 175, 190
BstKTI	GATC	1 cut(s)	81
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	78
BstMCI	CGRYCG	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	97
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	5 cut(s)	5, 59, 91, 143, 163
CviKI_1	RGCY	5 cut(s)	5, 59, 91, 143, 163
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	158
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	1 cut(s)	207
FaiI	YATR	3 cut(s)	87, 146, 205
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	1 cut(s)	203
GsaI	CCCAGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	4 cut(s)	37, 118, 175, 190
Hsp92II	CATG	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	78
LpnPI	CCDG	6 cut(s)	13, 69, 145, 172, 181, 197
LweI	GCATC	1 cut(s)	33
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	7, 11, 87
MroXI	GAANNNNTTC	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	98
NmeAIII	GCCGAG	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	51
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	158
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	3 cut(s)	61, 145, 157
SfaNI	GCATC	1 cut(s)	33
SgeI	CNNG	9 cut(s)	18, 40, 68, 105, 171, 172, 192, 196, 202
SinI	GGWCC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	4 cut(s)	37, 118, 175, 190
TspDTI	ATGAA	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.