RCHIOBHM_MTG0498271

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
OG0022054
Physical Location & Seq
Forward (+)
48602 .. 49698
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
ATGATATTGGAAAAATGGCAGCGTAACGTATTGAAAGGGATGGAAAGCGTTTCCATAGGAGCCCAACCTCCCTTTTTGCTTTGCGACCTCATCACTTCAATTCAAGCGCAAACAAATTTCTTTCTTAGTGGAGGTGCTGTCATCTATCTCGACCAGTTTCCCGAGGCGTTGGAAATCCAGACCGGCTCAGAGAATCACAGGTCCTTTGGACCCTTCGTTTCGCCAACAAAGAAGTCATCCTTGATGATATCCCATTCCTTCCCTGCCGAGCCGCCTCTCTTCGCCATTCGAAGTACTACCTCTGCCTTCCCTTTCTATAACACACCCAGGCGCCCTCACTGCTCAAGTAAGTGCGCGACTCCGTATGAGGACCTCCTTCCCTTCTGCCCACTCTCCGTTCACGCGGTTCTCAAAGCAGAGGAGGAAGGGTGGGCAGCAGTTCCCGTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGGAAGCAGCCCTAGCCTCTGTCCGGCCGATCATTCCGCTGGCATCTTGCATTCACGCCTTCCGTTTGACTGCCACTCGGGGATGTAGTTGTAGATACGTTAGTCTTAGTGGGTCGTTGGCTCCACCTGTTATCTCCTTCTACGACATGCTGTTGTCGTCGCCATATTCCATATGTCACTTAGTCATCTCTGCCTCGCTGCGGGGCAGCACCTCCGAAAGAAACGGAGGACTTCATTCAGTGACTCCGCGATCGCCCTCTGAACGATCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

28.18

Weight (kDa)

8.76

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07641
rosa_chinensis RchiOBHm_MTg0498271
rosa_laevigata RLG00000000356 RLG00000000393

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 330
AccII CGCG 4 cut(s) 356, 404, 495, 751
AciI CCGC 6 cut(s) 272, 404, 495, 539, 703, 749
AcoI YGGCCR 1 cut(s) 527
AcsI RAATTY 1 cut(s) 115
AcyI GRCGYC 1 cut(s) 331
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 2 cut(s) 525, 702
AgsI TTSAA 3 cut(s) 34, 99, 104
AjnI CCWGG 1 cut(s) 326
Alw21I GWGCWC 1 cut(s) 461
Alw44I GTGCAC 1 cut(s) 457
Ama87I CYCGRG 2 cut(s) 161, 579
AoxI GGCC 1 cut(s) 527
ApaLI GTGCAC 1 cut(s) 457
ApeKI GCWGC 5 cut(s) 19, 434, 509, 700, 708
ApoI RAATTY 1 cut(s) 115
AsiSI GCGATCGC 1 cut(s) 755
AspLEI GCGC 3 cut(s) 109, 333, 356
AspS9I GGNCC 3 cut(s) 201, 209, 370
AsuII TTCGAA 1 cut(s) 289
AvaI CYCGRG 2 cut(s) 161, 579
AvaII GGWCC 3 cut(s) 201, 209, 370
BaeGI GKGCMC 1 cut(s) 461
BaeI ACNNNNGTAYC 2 cut(s) 589, 622
BanI GGYRCC 1 cut(s) 330
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 5 cut(s) 31, 446, 521, 687, 720
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 328
BfaI CTAG 1 cut(s) 515
BfoI RGCGCY 1 cut(s) 334
BisI GCNGC 6 cut(s) 20, 272, 435, 510, 701, 709
BlsI GCNGC 6 cut(s) 21, 273, 436, 511, 702, 710
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 3 cut(s) 201, 209, 370
BmeT110I CYCGRG 2 cut(s) 161, 579
BmgT120I GGNCC 3 cut(s) 201, 209, 370
BmiI GGNNCC 4 cut(s) 61, 211, 332, 624
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 554
Bpu14I TTCGAA 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 162, 326
BsaWI WCCGGW 1 cut(s) 453
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 413, 443
Bsc4I CCNNNNNNNGG 2 cut(s) 525, 702
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 162, 326
BseGI GGATG 3 cut(s) 45, 236, 590
BseLI CCNNNNNNNGG 2 cut(s) 525, 702
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 461
BseX3I CGGCCG 1 cut(s) 527
BseXI GCAGC 5 cut(s) 31, 446, 521, 687, 720
Bsh1236I CGCG 4 cut(s) 356, 404, 495, 751
Bsh1285I CGRYCG 2 cut(s) 530, 755
BshFI GGCC 1 cut(s) 529
BshNI GGYRCC 1 cut(s) 330
BsiEI CGRYCG 2 cut(s) 530, 755
BsiHKAI GWGCWC 1 cut(s) 461
BsiHKCI CYCGRG 2 cut(s) 161, 579
BsiSI CCGG 3 cut(s) 183, 454, 526
BslI CCNNNNNNNGG 2 cut(s) 525, 702
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 1 cut(s) 529
BsoBI CYCGRG 2 cut(s) 161, 579
Bsp119I TTCGAA 1 cut(s) 289
Bsp1286I GDGCHC 2 cut(s) 64, 461
Bsp143I GATC 3 cut(s) 531, 752, 767
BspACI CCGC 6 cut(s) 272, 404, 495, 539, 703, 749
BspANI GGCC 1 cut(s) 529
BspCNI CTCAG 1 cut(s) 200
BspFNI CGCG 4 cut(s) 356, 404, 495, 751
BspLI GGNNCC 4 cut(s) 61, 211, 332, 624
BspT104I TTCGAA 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 2 cut(s) 162, 326
BssMI GATC 3 cut(s) 531, 752, 767
BssNI GRCGYC 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 331
BstBI TTCGAA 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 4 cut(s) 125, 187, 608, 682
BstF5I GGATG 3 cut(s) 45, 236, 590
BstFNI CGCG 4 cut(s) 356, 404, 495, 751
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 3 cut(s) 109, 333, 356
BstKTI GATC 3 cut(s) 534, 755, 770
BstMBI GATC 3 cut(s) 531, 752, 767
BstMCI CGRYCG 2 cut(s) 530, 755
BstMWI GCNNNNNNNGC 2 cut(s) 339, 515
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 652
BstSCI CCNGG 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 461
BstUI CGCG 4 cut(s) 356, 404, 495, 751
BstV1I GCAGC 5 cut(s) 31, 446, 521, 687, 720
BstZI CGGCCG 1 cut(s) 527
BsuRI GGCC 1 cut(s) 529
BtsCI GGATG 3 cut(s) 45, 236, 590
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 337, 747
Cac8I GCNNGC 1 cut(s) 543
CfoI GCGC 3 cut(s) 109, 333, 356
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 3 cut(s) 201, 209, 370
CseI GACGC 1 cut(s) 501
Csp6I GTAC 1 cut(s) 294
CviAII CATG 1 cut(s) 649
CviJI RGCY 7 cut(s) 62, 186, 271, 512, 518, 529, 623
CviKI_1 RGCY 7 cut(s) 62, 186, 271, 512, 518, 529, 623
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 4 cut(s) 125, 187, 608, 682
DinI GGCGCC 1 cut(s) 332
DpnI GATC 3 cut(s) 533, 754, 769
DpnII GATC 3 cut(s) 531, 752, 767
EaeI YGGCCR 1 cut(s) 527
EagI CGGCCG 1 cut(s) 527
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EclXI CGGCCG 1 cut(s) 527
Eco24I GRGCYC 1 cut(s) 64
Eco32I GATATC 1 cut(s) 249
Eco47I GGWCC 3 cut(s) 201, 209, 370
Eco52I CGGCCG 1 cut(s) 527
Eco88I CYCGRG 2 cut(s) 161, 579
EcoO109I RGGNCCY 2 cut(s) 201, 370
EcoRII CCWGG 1 cut(s) 326
EcoRV GATATC 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 64
EgeI GGCGCC 1 cut(s) 332
EheI GGCGCC 1 cut(s) 332
FaeI CATG 1 cut(s) 652
FaiI YATR 8 cut(s) 56, 318, 366, 470, 650, 667, 674, 676
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 1 cut(s) 648
FauI CCCGC 1 cut(s) 696
FauNDI CATATG 1 cut(s) 674
Fnu4HI GCNGC 6 cut(s) 20, 272, 435, 510, 701, 709
FokI GGATG 3 cut(s) 52, 223, 597
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 6 cut(s) 20, 272, 435, 510, 701, 709
FspBI CTAG 1 cut(s) 515
GlaI GCGC 3 cut(s) 108, 332, 355
GluI GCNGC 6 cut(s) 20, 272, 435, 510, 701, 709
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 1 cut(s) 529
HapII CCGG 3 cut(s) 183, 454, 526
HgaI GACGC 1 cut(s) 501
HhaI GCGC 3 cut(s) 109, 333, 356
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 1 cut(s) 652
Hin6I GCGC 3 cut(s) 107, 331, 354
HinP1I GCGC 3 cut(s) 107, 331, 354
HinfI GANTC 3 cut(s) 193, 358, 745
HpaII CCGG 3 cut(s) 183, 454, 526
Hpy166II GTNNAC 2 cut(s) 400, 459
Hpy188I TCNGA 5 cut(s) 190, 477, 718, 763, 772
Hpy188III TCNNGA 3 cut(s) 149, 161, 178
Hpy8I GTNNAC 2 cut(s) 400, 459
Hpy99I CGWCG 1 cut(s) 664
HpyCH4IV ACGT 2 cut(s) 27, 600
HpyCH4V TGCA 2 cut(s) 459, 552
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 515
HpyF3I CTNAG 4 cut(s) 125, 187, 608, 682
HpySE526I ACGT 2 cut(s) 27, 600
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 1 cut(s) 652
HspAI GCGC 3 cut(s) 107, 331, 354
KasI GGCGCC 1 cut(s) 330
Kzo9I GATC 3 cut(s) 531, 752, 767
LmnI GCTCC 2 cut(s) 59, 628
Lsp1109I GCAGC 5 cut(s) 31, 446, 521, 687, 720
LweI GCATC 1 cut(s) 554
MaeI CTAG 1 cut(s) 515
MaeII ACGT 2 cut(s) 27, 600
MaeIII GTNAC 3 cut(s) 23, 677, 742
MalI GATC 3 cut(s) 533, 754, 769
MboI GATC 3 cut(s) 531, 752, 767
MboII GAAGA 1 cut(s) 271
MhlI GDGCHC 2 cut(s) 64, 461
MluCI AATT 2 cut(s) 99, 115
Mly113I GGCGCC 1 cut(s) 331
MlyI GAGTC 2 cut(s) 352, 739
MmeI TCCRAC 2 cut(s) 150, 500
MspA1I CMGCKG 1 cut(s) 541
MspI CCGG 3 cut(s) 183, 454, 526
MspR9I CCNGG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 4 cut(s) 356, 404, 495, 751
MwoI GCNNNNNNNGC 2 cut(s) 339, 515
NarI GGCGCC 1 cut(s) 331
NdeI CATATG 1 cut(s) 674
NdeII GATC 3 cut(s) 531, 752, 767
NlaIII CATG 1 cut(s) 652
NlaIV GGNNCC 4 cut(s) 61, 211, 332, 624
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 677, 742
NspI RCATGY 1 cut(s) 652
NspV TTCGAA 1 cut(s) 289
PctI GAATGC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 6 cut(s) 21, 273, 436, 511, 702, 710
Ple19I CGATCG 1 cut(s) 755
PleI GAGTC 2 cut(s) 352, 739
PluTI GGCGCC 1 cut(s) 334
PpsI GAGTC 2 cut(s) 352, 739
PpuMI RGGWCCY 2 cut(s) 201, 370
Psp5II RGGWCCY 2 cut(s) 201, 370
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 4 cut(s) 61, 211, 332, 624
PspPI GGNCC 3 cut(s) 201, 209, 370
PspPPI RGGWCCY 2 cut(s) 201, 370
PvuI CGATCG 1 cut(s) 755
RgaI GCGATCGC 1 cut(s) 755
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SatI GCNGC 6 cut(s) 20, 272, 435, 510, 701, 709
Sau3AI GATC 3 cut(s) 531, 752, 767
Sau96I GGNCC 3 cut(s) 201, 209, 370
ScaI AGTACT 1 cut(s) 295
SchI GAGTC 2 cut(s) 352, 739
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 2 cut(s) 64, 461
SfaAI GCGATCGC 1 cut(s) 755
SfaNI GCATC 1 cut(s) 554
SfoI GGCGCC 1 cut(s) 332
SfuI TTCGAA 1 cut(s) 289
SgfI GCGATCGC 1 cut(s) 755
SinI GGWCC 3 cut(s) 201, 209, 370
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 2 cut(s) 99, 115
SsiI CCGC 6 cut(s) 272, 404, 495, 539, 703, 749
SspDI GGCGCC 1 cut(s) 330
SspMI CTAG 1 cut(s) 515
StyD4I CCNGG 1 cut(s) 326
TaiI ACGT 2 cut(s) 30, 603
TaqI TCGA 2 cut(s) 150, 289
TasI AATT 2 cut(s) 99, 115
TatI WGTACW 1 cut(s) 293
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 2 cut(s) 344, 747
TseFI GTSAC 2 cut(s) 677, 742
TseI GCWGC 5 cut(s) 19, 434, 509, 700, 708
Tsp45I GTSAC 2 cut(s) 677, 742
TspDTI ATGAA 1 cut(s) 725
TspGWI ACGGA 4 cut(s) 351, 385, 554, 741
TspRI CASTG 2 cut(s) 344, 747
VneI GTGCAC 1 cut(s) 457
VpaK11BI GGWCC 3 cut(s) 201, 209, 370
XapI RAATTY 1 cut(s) 115
XceI RCATGY 1 cut(s) 652
XspI CTAG 1 cut(s) 515
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.