Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021464

Physical Location & Seq

Genomic Coordinates Forward (+)

3763168 .. 3764408

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTGGCAGCTGGTGGGGATGGGTGGTTTATGAGGAAAATAGCAAATATAATGATGAGAATCGTCAAGGTGTTAAATACAAGTCAAAGGCTAGGATTGTCCTTGTTGGTTCAGGTGCAGATGAGCAATGTGCTGGCTATGGTAGGCACAGAACAAAATATAGAAGTGGAAGTTGGCTGCGGCTGCATGAGGAAATGAAACTGGATATGCAAAGAATATGGAAAAGAAACCTTGGTAGAGATGATAGATGCATTGCTGACACTGGCAAGGAGGGAAGGTTTCCTTTCTTGGATGAGGATGTTATACGAACTTTATTGGGGATTCCTCTCTGGGAGGTTACCAACCTTGATCAACCAAGTGGAATAGGAGATACGAAGATTCTGAGAGAGGTTGCGGAATTGCTTGGTTTACATGAAGCTGCTACTCTGCCTAAACGAGCTATACAGTTTGGTACAAGAATTGCAAGGGAATCCAATAGAAAGAATTTCGGAAGTAACCGTGCTGCAAATCAGGCATCTGCGGGGAGTGTGGTGATTCACAAGCAGTTGGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0032787 GO:0034641 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046983 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

186

Amino Acids

21.12

Weight (kDa)

9.42

Isoelectric Point (pI)

25.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	56 - 135	5.4e-08	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021464)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0182531
rosa_multiflora	Rmu_sc0006047.1_g000003
rosa_samantha	Rh7CG052900 Rh7DG050900
rosa_wichuraiana	Rw7G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	181, 395, 521
AcsI	RAATTY	1 cut(s)	484
AfaI	GTAC	1 cut(s)	454
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	3 cut(s)	12, 419, 440
AluI	AGCT	3 cut(s)	12, 419, 440
ApeKI	GCWGC	5 cut(s)	9, 178, 184, 419, 503
ApoI	RAATTY	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	544
BbvI	GCAGC	5 cut(s)	21, 165, 171, 406, 490
BccI	CCATC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	349
BfaI	CTAG	1 cut(s)	93
BisI	GCNGC	6 cut(s)	10, 179, 182, 185, 420, 504
BlsI	GCNGC	6 cut(s)	11, 180, 183, 186, 421, 505
BmsI	GCATC	2 cut(s)	239, 524
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bse1I	ACTGG	2 cut(s)	207, 268
Bse3DI	GCAATG	2 cut(s)	134, 252
Bse8I	GATNNNNATC	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	3 cut(s)	26, 298, 304
BseJI	GATNNNNATC	1 cut(s)	60
BseMI	GCAATG	2 cut(s)	134, 252
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	207, 268
BseXI	GCAGC	5 cut(s)	21, 165, 171, 406, 490
BsgI	GTGCAG	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	3 cut(s)	181, 395, 521
BspCNI	CTCAG	1 cut(s)	375
BsrDI	GCAATG	2 cut(s)	134, 252
BsrI	ACTGG	2 cut(s)	207, 268
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	447, 500
BstC8I	GCNNGC	2 cut(s)	7, 136
BstDEI	CTNAG	2 cut(s)	383, 558
BstEII	GGTNACC	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	26, 298, 304
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 512
BstPI	GGTNACC	1 cut(s)	337
BstV1I	GCAGC	5 cut(s)	21, 165, 171, 406, 490
BtsCI	GGATG	3 cut(s)	26, 298, 304
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	7, 136
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	3 cut(s)	188, 413, 553
CviJI	RGCY	9 cut(s)	5, 12, 92, 138, 178, 184, 419, 440, 557
CviKI_1	RGCY	9 cut(s)	5, 12, 92, 138, 178, 184, 419, 440, 557
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	2 cut(s)	383, 558
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	232
Eco91I	GGTNACC	1 cut(s)	337
EcoO65I	GGTNACC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	232
EcoT22I	ATGCAT	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	3 cut(s)	191, 416, 556
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FatI	CATG	3 cut(s)	187, 412, 552
FauI	CCCGC	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	6 cut(s)	10, 179, 182, 185, 420, 504
FokI	GGATG	3 cut(s)	33, 305, 311
Fsp4HI	GCNGC	6 cut(s)	10, 179, 182, 185, 420, 504
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	6 cut(s)	10, 179, 182, 185, 420, 504
Hin1II	CATG	3 cut(s)	191, 416, 556
HinfI	GANTC	5 cut(s)	61, 322, 379, 470, 535
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	2 cut(s)	384, 491
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	2 cut(s)	447, 500
HpyCH4V	TGCA	6 cut(s)	119, 187, 211, 252, 464, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 512
HpyF3I	CTNAG	2 cut(s)	383, 558
Hsp92II	CATG	3 cut(s)	191, 416, 556
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	349
LpnPI	CCDG	6 cut(s)	99, 120, 188, 249, 316, 497
Lsp1109I	GCAGC	5 cut(s)	21, 165, 171, 406, 490
LweI	GCATC	2 cut(s)	239, 524
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	337, 494
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	1 cut(s)	388
MluCI	AATT	3 cut(s)	398, 459, 484
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	7 cut(s)	28, 184, 265, 289, 328, 336, 382
Mph1103I	ATGCAT	1 cut(s)	254
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	184, 512
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	191, 416, 556
NsiI	ATGCAT	1 cut(s)	254
PfeI	GAWTC	5 cut(s)	61, 322, 379, 470, 535
PkrI	GCNGC	6 cut(s)	11, 180, 183, 186, 421, 505
PspEI	GGTNACC	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	6 cut(s)	10, 179, 182, 185, 420, 504
Sau3AI	GATC	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	239, 524
Sse9I	AATT	3 cut(s)	398, 459, 484
SsiI	CCGC	3 cut(s)	181, 395, 521
SspMI	CTAG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	447, 500
TasI	AATT	3 cut(s)	398, 459, 484
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	5 cut(s)	61, 322, 379, 470, 535
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	5 cut(s)	9, 178, 184, 419, 503
TspDTI	ATGAA	2 cut(s)	212, 429
TspRI	CASTG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	484
XspI	CTAG	1 cut(s)	93
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.