Rmu_sc0006047.1_g000003

Asparagine synthetase domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006047.1
Physical Location & Seq
Reverse (-)
17356 .. 18415
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006047.1_g000003.1.cds

Sequence Viewer

Length: 504 bp
atggctggcagctggtggggatgggtggtttatgaggaaaatagcaaatataatgatgagaatcgtcaaggtgttaaatacaagtcaaaggctaggattgtccttgttggttcaggtgcagatgagcaatgtgctggctatggtaggcacagaacaaaatatagaagtggaagttggctgcggctgcatgaggaaatgaaactggatatgcaaagaatatggaaaagaaaccttggtagagatgatagatgcattgctgacactggcaaggagggaaggtttcctttcttggatgaagatgttatacgaactttattggggattcctctctgggaggttaccaaccttgatcaaccaagtggaataggagataagaagattctgagagagtttggtacaagaattgcaagggaatccaatagaaagaatttcggaagtaaccgtgctgcaaatcaggcatctgcggggagtgtggtgattcacaagcagttggacatggcttag

Protein Analysis

167

Amino Acids

19.13

Weight (kDa)

9.54

Isoelectric Point (pI)

24.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021464)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0182531
rosa_multiflora Rmu_sc0006047.1_g000003
rosa_samantha Rh7CG052900 Rh7DG050900
rosa_wichuraiana Rw7G004190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 181, 464
AcsI RAATTY 1 cut(s) 427
AfaI GTAC 1 cut(s) 397
AjuI GAANNNNNNNTTGG 2 cut(s) 157, 189
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
ApeKI GCWGC 4 cut(s) 9, 178, 184, 446
ApoI RAATTY 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 487
BarI GAAGNNNNNNTAC 2 cut(s) 288, 320
BbvI GCAGC 4 cut(s) 21, 165, 171, 433
BccI CCATC 1 cut(s) 15
BclI TGATCA 1 cut(s) 349
BfaI CTAG 1 cut(s) 93
BisI GCNGC 5 cut(s) 10, 179, 182, 185, 447
BlsI GCNGC 5 cut(s) 11, 180, 183, 186, 448
BmsI GCATC 2 cut(s) 239, 467
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse1I ACTGG 2 cut(s) 207, 268
Bse3DI GCAATG 2 cut(s) 134, 252
Bse8I GATNNNNATC 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 2 cut(s) 26, 298
BseJI GATNNNNATC 1 cut(s) 60
BseMI GCAATG 2 cut(s) 134, 252
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 2 cut(s) 207, 268
BseXI GCAGC 4 cut(s) 21, 165, 171, 433
BsgI GTGCAG 1 cut(s) 138
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 2 cut(s) 181, 464
BspCNI CTCAG 1 cut(s) 375
BsrDI GCAATG 2 cut(s) 134, 252
BsrI ACTGG 2 cut(s) 207, 268
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 7, 136
BstDEI CTNAG 2 cut(s) 383, 501
BstEII GGTNACC 1 cut(s) 337
BstF5I GGATG 2 cut(s) 26, 298
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 2 cut(s) 184, 455
BstPI GGTNACC 1 cut(s) 337
BstV1I GCAGC 4 cut(s) 21, 165, 171, 433
BtsCI GGATG 2 cut(s) 26, 298
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 2 cut(s) 7, 136
Csp6I GTAC 1 cut(s) 396
CviAII CATG 2 cut(s) 188, 496
CviJI RGCY 7 cut(s) 5, 12, 92, 138, 178, 184, 500
CviKI_1 RGCY 7 cut(s) 5, 12, 92, 138, 178, 184, 500
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 2 cut(s) 383, 501
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 232
Eco91I GGTNACC 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 191, 499
FaiI YATR 9 cut(s) 33, 51, 141, 162, 189, 209, 220, 305, 497
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FatI CATG 2 cut(s) 187, 495
FauI CCCGC 1 cut(s) 457
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 5 cut(s) 10, 179, 182, 185, 447
FokI GGATG 2 cut(s) 33, 305
Fsp4HI GCNGC 5 cut(s) 10, 179, 182, 185, 447
FspBI CTAG 1 cut(s) 93
GluI GCNGC 5 cut(s) 10, 179, 182, 185, 447
Hin1II CATG 2 cut(s) 191, 499
HinfI GANTC 5 cut(s) 61, 322, 379, 413, 478
HphI GGTGA 1 cut(s) 487
Hpy188I TCNGA 2 cut(s) 384, 434
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4V TGCA 6 cut(s) 119, 187, 211, 252, 407, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 455
HpyF3I CTNAG 2 cut(s) 383, 501
Hsp92II CATG 2 cut(s) 191, 499
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 1 cut(s) 349
LpnPI CCDG 6 cut(s) 99, 120, 188, 249, 316, 440
Lsp1109I GCAGC 4 cut(s) 21, 165, 171, 433
LweI GCATC 2 cut(s) 239, 467
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 337, 437
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 2 cut(s) 308, 388
MluCI AATT 2 cut(s) 402, 427
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 5 cut(s) 28, 184, 265, 328, 336
Mph1103I ATGCAT 1 cut(s) 254
MseI TTAA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 184, 455
NdeII GATC 1 cut(s) 349
NlaIII CATG 2 cut(s) 191, 499
NsiI ATGCAT 1 cut(s) 254
PfeI GAWTC 5 cut(s) 61, 322, 379, 413, 478
PkrI GCNGC 5 cut(s) 11, 180, 183, 186, 448
PspEI GGTNACC 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 12
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 5 cut(s) 10, 179, 182, 185, 447
Sau3AI GATC 1 cut(s) 349
SetI ASST 7 cut(s) 14, 73, 118, 234, 281, 339, 348
SfaNI GCATC 2 cut(s) 239, 467
Sse9I AATT 2 cut(s) 402, 427
SsiI CCGC 2 cut(s) 181, 464
SspMI CTAG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 443
TasI AATT 2 cut(s) 402, 427
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 5 cut(s) 61, 322, 379, 413, 478
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 1 cut(s) 268
TseI GCWGC 4 cut(s) 9, 178, 184, 446
TspDTI ATGAA 2 cut(s) 212, 309
TspRI CASTG 1 cut(s) 268
XapI RAATTY 1 cut(s) 427
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.