Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0021464

Physical Location & Seq

Genomic Coordinates Forward (+)

3846176 .. 3847870

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAGGCCATGAAGTGGAAACTTGTGGAGATTGAGGCTGACTTATCAAACTTGACCTTTGAAACAAAGCGTGACCTAAATATAGGAATTGCTTTATGGCTGGCAGCTGGTGGGGATGGATGGGTTTATGAGGAAAATAGCAAATATAATGATGAGAATCGTCAAGGTGTTAAATACAAGTCAAAGGCTAGGATTGTCCTTGTTGGTTCAGGTGCAGATGAGCAATGTGCTGGCCATGGTAGGCACAGAACAAAATATAGAAGTGGAAGTTGGCTGCGGCTGCATGAGGAAATGAAACTGGATATGCAAAGAATATGGAAAAGAAACCTTGGTAGAGATGATAGATGCATTGCTGACACTGGCAAGGAGTTTCCTTTCTTGGATGAAGATGTTATACGAACTTTATTGGGGATTCCTCTCTGGGAGGTTACCAACCTTGATCAACCAAGTGGAATAGGAGATAAGAAGATTCTGAGAGAGGTTGCGGAATTGCTTGGTTTACATGAAGCTGCTACTCTGCCTAAACGAGCTATACAGTTTGGTACAAGAATTGCAAGGGAATCCAATAGAAAGAATTTCGGAAGTAACCGTGCTGCAAATCAGGCATCTGCGGGGAGTGTGGTGATTCACAAGCAGTTGGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0032787 GO:0034641 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0046983 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

216

Amino Acids

24.43

Weight (kDa)

9.18

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021464)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0182531
rosa_multiflora	Rmu_sc0006047.1_g000003
rosa_samantha	Rh7CG052900 Rh7DG050900
rosa_wichuraiana	Rw7G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	15
AciI	CCGC	3 cut(s)	277, 485, 611
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	574
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
AluBI	AGCT	3 cut(s)	107, 509, 530
AluI	AGCT	3 cut(s)	107, 509, 530
AoxI	GGCC	2 cut(s)	6, 232
ApeKI	GCWGC	5 cut(s)	104, 274, 280, 509, 593
ApoI	RAATTY	1 cut(s)	574
AsuHPI	GGTGA	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbvI	GCAGC	5 cut(s)	116, 261, 267, 496, 580
BccI	CCATC	2 cut(s)	110, 114
BclI	TGATCA	1 cut(s)	439
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	6 cut(s)	105, 275, 278, 281, 510, 594
BlsI	GCNGC	6 cut(s)	106, 276, 279, 282, 511, 595
BmsI	GCATC	2 cut(s)	335, 614
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	235, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	2 cut(s)	303, 364
Bse3DI	GCAATG	2 cut(s)	230, 348
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	235, 328
BseGI	GGATG	3 cut(s)	121, 125, 388
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMI	GCAATG	2 cut(s)	230, 348
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	2 cut(s)	303, 364
BseXI	GCAGC	5 cut(s)	116, 261, 267, 496, 580
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	8, 234
BslI	CCNNNNNNNGG	1 cut(s)	15
BsnI	GGCC	2 cut(s)	8, 234
Bsp143I	GATC	1 cut(s)	439
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	3 cut(s)	277, 485, 611
BspANI	GGCC	2 cut(s)	8, 234
BspCNI	CTCAG	1 cut(s)	465
BsrDI	GCAATG	2 cut(s)	230, 348
BsrI	ACTGG	2 cut(s)	303, 364
BssECI	CCNNGG	2 cut(s)	235, 328
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	2 cut(s)	235, 328
Bst4CI	ACNGT	2 cut(s)	537, 590
BstC8I	GCNNGC	2 cut(s)	102, 232
BstDEI	CTNAG	2 cut(s)	473, 648
BstDSI	CCRYGG	1 cut(s)	235
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	3 cut(s)	121, 125, 388
BstKTI	GATC	1 cut(s)	442
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 602
BstPI	GGTNACC	1 cut(s)	427
BstV1I	GCAGC	5 cut(s)	116, 261, 267, 496, 580
BsuRI	GGCC	2 cut(s)	8, 234
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	121, 125, 388
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	102, 232
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	5 cut(s)	10, 236, 284, 503, 643
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	2 cut(s)	473, 648
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	235, 328
Eco91I	GGTNACC	1 cut(s)	427
EcoO65I	GGTNACC	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	235, 328
EcoT22I	ATGCAT	1 cut(s)	350
ErhI	CCWWGG	2 cut(s)	235, 328
FaeI	CATG	5 cut(s)	13, 239, 287, 506, 646
FatI	CATG	5 cut(s)	9, 235, 283, 502, 642
FauI	CCCGC	1 cut(s)	604
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	6 cut(s)	105, 275, 278, 281, 510, 594
FokI	GGATG	3 cut(s)	128, 132, 395
Fsp4HI	GCNGC	6 cut(s)	105, 275, 278, 281, 510, 594
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	6 cut(s)	105, 275, 278, 281, 510, 594
HaeIII	GGCC	2 cut(s)	8, 234
Hin1II	CATG	5 cut(s)	13, 239, 287, 506, 646
HinfI	GANTC	5 cut(s)	157, 412, 469, 560, 625
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	474, 581
Hpy8I	GTNNAC	1 cut(s)	500
HpyCH4III	ACNGT	2 cut(s)	537, 590
HpyCH4V	TGCA	6 cut(s)	215, 283, 307, 348, 554, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 602
HpyF3I	CTNAG	2 cut(s)	473, 648
Hsp92II	CATG	5 cut(s)	13, 239, 287, 506, 646
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	1 cut(s)	439
LpnPI	CCDG	8 cut(s)	86, 93, 195, 216, 284, 345, 406, 587
Lsp1109I	GCAGC	5 cut(s)	116, 261, 267, 496, 580
LweI	GCATC	2 cut(s)	335, 614
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	71, 427, 584
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	2 cut(s)	398, 478
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	4 cut(s)	87, 488, 549, 574
MluNI	TGGCCA	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	6 cut(s)	28, 124, 280, 418, 426, 472
Mox20I	TGGCCA	1 cut(s)	234
Mph1103I	ATGCAT	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	280, 602
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	5 cut(s)	13, 239, 287, 506, 646
NmuCI	GTSAC	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	350
PfeI	GAWTC	5 cut(s)	157, 412, 469, 560, 625
PflMI	CCANNNNNTGG	1 cut(s)	15
PkrI	GCNGC	6 cut(s)	106, 276, 279, 282, 511, 595
PspEI	GGTNACC	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	6 cut(s)	105, 275, 278, 281, 510, 594
Sau3AI	GATC	1 cut(s)	439
SfaNI	GCATC	2 cut(s)	335, 614
Sse9I	AATT	4 cut(s)	87, 488, 549, 574
SsiI	CCGC	3 cut(s)	277, 485, 611
SspMI	CTAG	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	235, 328
TaaI	ACNGT	2 cut(s)	537, 590
TasI	AATT	4 cut(s)	87, 488, 549, 574
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	5 cut(s)	157, 412, 469, 560, 625
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	5 cut(s)	104, 274, 280, 509, 593
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	5 cut(s)	17, 26, 308, 399, 519
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	574
XspI	CTAG	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.