Rw7G004190

Asparagine synthetase domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
3543551 .. 3548494
4944 bp
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UTR
Exon/CDS
Intron
Rw7G004190.1

Sequence Viewer

Length: 501 bp
ATGAACAATGACCAAAATATAGGAATTGCTTTATGGCTGGCAGCTGGTGGGGATGGATGGGTTTATGAGGAAAATAGAAAATATAATGATGAGAATCGTCAAGGTGTTAAATACAAGTCAAAGGCTAGGATTGTCCTTGTTGGTTCAGGTGCAGATGAGCAATGTGCTGGCTATGGTAGGCACAGAACAAAATATAGAAGTGGAAGTTGGCTGCGGCTGCATGAGGAAATGAAACTGGATATGCAAAGAATATGGAAAAGAAACCTTGGTAGGGATGATAAGATGTTTCATGAAGATGTTATACGAACTTTATTGGGGATTCCTCTCTGCGAGGTTACCAACCTTGATCAACCAAGTGGAATAGGAGATGAGAAGATTCTGAGAGAGTTTGGTACAAGAATTGCAAGGGAATCCAATAGAAAGAATTTCGGAAGTAACCGTGCTGCAAATCAGGCATCTGTGGTGAGTGTGGTGATTCACAAGCAGTTGGACATGGCTTAG

Protein Analysis

166

Amino Acids

18.96

Weight (kDa)

9.3

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021464)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0182531
rosa_multiflora Rmu_sc0006047.1_g000003
rosa_samantha Rh7CG052900 Rh7DG050900
rosa_wichuraiana Rw7G004190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 424
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
ApeKI GCWGC 4 cut(s) 41, 211, 217, 443
ApoI RAATTY 1 cut(s) 424
AsuHPI GGTGA 2 cut(s) 475, 484
BarI GAAGNNNNNNTAC 2 cut(s) 285, 317
BbvI GCAGC 4 cut(s) 53, 198, 204, 430
BccI CCATC 2 cut(s) 47, 51
BclI TGATCA 1 cut(s) 346
BfaI CTAG 1 cut(s) 126
BisI GCNGC 5 cut(s) 42, 212, 215, 218, 444
BlsI GCNGC 5 cut(s) 43, 213, 216, 219, 445
BmsI GCATC 1 cut(s) 464
BsaBI GATNNNNATC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 3 cut(s) 58, 62, 280
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 4 cut(s) 53, 198, 204, 430
BsgI GTGCAG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 271
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 372
BspHI TCATGA 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 39, 169
BstDEI CTNAG 2 cut(s) 380, 498
BstEII GGTNACC 1 cut(s) 334
BstF5I GGATG 3 cut(s) 58, 62, 280
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 217, 452
BstPI GGTNACC 1 cut(s) 334
BstV1I GCAGC 4 cut(s) 53, 198, 204, 430
BtsCI GGATG 3 cut(s) 58, 62, 280
Cac8I GCNNGC 2 cut(s) 39, 169
CciI TCATGA 1 cut(s) 289
Csp6I GTAC 1 cut(s) 393
CviAII CATG 3 cut(s) 221, 290, 493
CviJI RGCY 7 cut(s) 37, 44, 125, 171, 211, 217, 497
CviKI_1 RGCY 7 cut(s) 37, 44, 125, 171, 211, 217, 497
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 2 cut(s) 380, 498
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 265
Eco91I GGTNACC 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 3 cut(s) 224, 293, 496
FatI CATG 3 cut(s) 220, 289, 492
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 5 cut(s) 42, 212, 215, 218, 444
FokI GGATG 3 cut(s) 65, 69, 287
Fsp4HI GCNGC 5 cut(s) 42, 212, 215, 218, 444
FspBI CTAG 1 cut(s) 126
GluI GCNGC 5 cut(s) 42, 212, 215, 218, 444
Hin1II CATG 3 cut(s) 224, 293, 496
HinfI GANTC 5 cut(s) 94, 319, 376, 410, 475
HphI GGTGA 2 cut(s) 475, 484
Hpy188I TCNGA 2 cut(s) 381, 431
Hpy188III TCNNGA 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4V TGCA 5 cut(s) 152, 220, 244, 404, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 452
HpyF3I CTNAG 2 cut(s) 380, 498
Hsp92II CATG 3 cut(s) 224, 293, 496
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 1 cut(s) 346
LpnPI CCDG 6 cut(s) 23, 30, 132, 153, 221, 437
Lsp1109I GCAGC 4 cut(s) 53, 198, 204, 430
LweI GCATC 1 cut(s) 464
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 334, 434
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 2 cut(s) 305, 385
MluCI AATT 3 cut(s) 24, 399, 424
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 4 cut(s) 61, 217, 325, 333
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 217, 452
NdeII GATC 1 cut(s) 346
NlaIII CATG 3 cut(s) 224, 293, 496
PagI TCATGA 1 cut(s) 289
PfeI GAWTC 5 cut(s) 94, 319, 376, 410, 475
PkrI GCNGC 5 cut(s) 43, 213, 216, 219, 445
PspEI GGTNACC 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 5 cut(s) 42, 212, 215, 218, 444
Sau3AI GATC 1 cut(s) 346
SetI ASST 6 cut(s) 46, 106, 151, 267, 336, 345
SfaNI GCATC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 3 cut(s) 24, 399, 424
SsiI CCGC 1 cut(s) 214
SspMI CTAG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 440
TasI AATT 3 cut(s) 24, 399, 424
TauI GCSGC 1 cut(s) 217
TfiI GAWTC 5 cut(s) 94, 319, 376, 410, 475
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseI GCWGC 4 cut(s) 41, 211, 217, 443
TspDTI ATGAA 4 cut(s) 17, 245, 278, 306
XapI RAATTY 1 cut(s) 424
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.