RchiOBHm_Chr7g0182561

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020356
Physical Location & Seq
Reverse (-)
3767328 .. 3768684
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGTTTGTAATGGTTGGGGATTTGAAGGAAAAGTGGGTAGCAGCCATCATGATCGGAGGTGCTCGTGTTCGGCTGAACCGGTGGCAGCATGCGGCTGTGGTAGTTGGGTCGGCGGTGGGGGCATTGTTGGACCCAAGAAGAGCTGACCTGATAGCAGCTTTGGGGGAGACAACTGGGAAGCCGGCATTCGAAAGAGTTGTTCAGAGAATGAAGAGTAGCCCTGAAGGCAGAATTTTCTCTTGGCCATACTGTCGGAGCAACCCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coq4

Protein Analysis

89

Amino Acids

9.79

Weight (kDa)

10.48

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coq4 PF05019 22 - 77 2.6e-14 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020356)

Species Orthologous Gene IDs
malus_domestica MD13G1061300.v1.1
rosa_chinensis RchiOBHm_Chr7g0182561
rosa_laevigata RLG00000001441 RLG00000001445
rosa_multiflora Rmu_sc0005811.1_g000004
rosa_samantha Rh7AG051900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 92, 113
AcoI YGGCCR 1 cut(s) 242
AcsI RAATTY 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 243
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 25
AjuI GAANNNNNNNTTGG 2 cut(s) 223, 255
AluBI AGCT 2 cut(s) 143, 158
AluI AGCT 2 cut(s) 143, 158
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 161
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 3 cut(s) 41, 85, 155
ApoI RAATTY 1 cut(s) 231
AsiGI ACCGGT 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 244
BauI CACGAG 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 3 cut(s) 53, 97, 167
BccI CCATC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 4 cut(s) 42, 86, 93, 156
BlsI GCNGC 4 cut(s) 43, 87, 94, 157
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 132
BmrI ACTGGG 1 cut(s) 183
BmuI ACTGGG 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 78
Bse118I RCCGGY 2 cut(s) 78, 181
Bse1I ACTGG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 3 cut(s) 53, 97, 167
BshFI GGCC 1 cut(s) 244
BshTI ACCGGT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 2 cut(s) 79, 182
BsmAI GTCTC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 1 cut(s) 244
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 2 cut(s) 92, 113
BspANI GGCC 1 cut(s) 244
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 132
BspQI GCTCTTC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 189
BsrFI RCCGGY 2 cut(s) 78, 181
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 2 cut(s) 78, 181
BssMI GATC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 2 cut(s) 133, 206
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 90, 183
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 119, 225
BstNSI RCATGY 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 53, 97, 167
BsuRI GGCC 1 cut(s) 244
Cac8I GCNNGC 2 cut(s) 90, 183
CciI TCATGA 1 cut(s) 48
Cfr10I RCCGGY 2 cut(s) 78, 181
Cfr13I GGNCC 1 cut(s) 130
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 2 cut(s) 49, 89
CviJI RGCY 8 cut(s) 44, 73, 95, 143, 158, 181, 219, 244
CviKI_1 RGCY 8 cut(s) 44, 73, 95, 143, 158, 181, 219, 244
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 242
Eam1104I CTCTTC 2 cut(s) 133, 206
EarI CTCTTC 2 cut(s) 133, 206
Eco47I GGWCC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 243
FaeI CATG 2 cut(s) 52, 92
FaiI YATR 3 cut(s) 50, 90, 247
FatI CATG 2 cut(s) 48, 88
Fnu4HI GCNGC 4 cut(s) 42, 86, 93, 156
Fsp4HI GCNGC 4 cut(s) 42, 86, 93, 156
GluI GCNGC 4 cut(s) 42, 86, 93, 156
HaeIII GGCC 1 cut(s) 244
HapII CCGG 2 cut(s) 79, 182
Hin1II CATG 2 cut(s) 52, 92
HpaII CCGG 2 cut(s) 79, 182
Hpy188I TCNGA 3 cut(s) 56, 204, 255
Hpy188III TCNNGA 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 19, 218
HpyCH4III ACNGT 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 225
Hsp92II CATG 2 cut(s) 52, 92
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 1 cut(s) 51
LguI GCTCTTC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 5 cut(s) 92, 159, 161, 195, 234
Lsp1109I GCAGC 3 cut(s) 53, 97, 167
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 2 cut(s) 150, 223
MhlI GDGCHC 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 244
MluCI AATT 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 244
MmeI TCCRAC 2 cut(s) 108, 233
MnlI CCTC 1 cut(s) 50
Mox20I TGGCCA 1 cut(s) 244
MroNI GCCGGC 1 cut(s) 181
MscI TGGCCA 1 cut(s) 244
Msp20I TGGCCA 1 cut(s) 244
MspI CCGG 2 cut(s) 79, 182
Mva1269I GAATGC 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 119, 225
NaeI GCCGGC 1 cut(s) 183
NdeII GATC 1 cut(s) 51
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 2 cut(s) 52, 92
NlaIV GGNNCC 1 cut(s) 132
NspI RCATGY 1 cut(s) 92
NspV TTCGAA 1 cut(s) 189
PaeI GCATGC 1 cut(s) 92
PagI TCATGA 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 133
PctI GAATGC 1 cut(s) 185
PdiI GCCGGC 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 4 cut(s) 43, 87, 94, 157
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 130
SapI GCTCTTC 1 cut(s) 133
SatI GCNGC 4 cut(s) 42, 86, 93, 156
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 64
SetI ASST 4 cut(s) 61, 145, 150, 160
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 130
SphI GCATGC 1 cut(s) 92
Sse9I AATT 1 cut(s) 231
SsiI CCGC 2 cut(s) 92, 113
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 231
TauI GCSGC 1 cut(s) 95
TseI GCWGC 3 cut(s) 41, 85, 155
TspDTI ATGAA 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 1 cut(s) 231
XceI RCATGY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.