Rmu_sc0005811.1_g000004

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005811.1
OG0020356
Physical Location & Seq
Reverse (-)
13670 .. 15014
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005811.1_g000004.1.cds

Sequence Viewer

Length: 711 bp
atggttagggatttgaaggaaaagtgggtagcagccatcatgatcggaggtgctcgtgttcggctgaaccggtggcagcatgcggctgtggtagttgggtcggcggtgggggcattgctggacccaagaagagctgacctgatagcagctttgggggagacaactgggaagccggcattcgaaagagttgttcagagaatgaatagtagccctgaaggcagagccatactgtcggagcaaccccgtgtaatatctgcaaatgtgggtcatgcatgggatcttccgccgaatacatttggtgctgcctatgcgaagttcatgggatctaggaacttctctaatcgaccaccagtgcgtttcatggaaacagatgaacttgcatatggagccatgagggctcgtgaggtgcacgacttctggcacaccctctttaaccttccaacaaacttgatgggtgagtcagcacttaaagtaatagagaagcaaagaaaattgttcttccagcactactttccttgggccattagagctggtatgctgtcaaccgatctcatgtgtatttattatgagaaacactttcatgaggatttgaaggatgttctgagaaagtggggtataactcctgctcctacagttcctaaacaaacccaagcagcagcagcttcatctgtctggtctagtgaagaagccataaatttgtgtgaacattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coq4

Protein Analysis

236

Amino Acids

26.59

Weight (kDa)

9.3

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020356)

Species Orthologous Gene IDs
malus_domestica MD13G1061300.v1.1
rosa_chinensis RchiOBHm_Chr7g0182561
rosa_laevigata RLG00000001441 RLG00000001445
rosa_multiflora Rmu_sc0005811.1_g000004
rosa_samantha Rh7AG051900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 83, 104, 284
AclWI GGATC 2 cut(s) 285, 331
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 1 cut(s) 234
AgeI ACCGGT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 16, 592
AluBI AGCT 4 cut(s) 134, 149, 530, 662
AluI AGCT 4 cut(s) 134, 149, 530, 662
Alw21I GWGCWC 2 cut(s) 55, 411
Alw26I GTCTC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 407
AlwI GGATC 2 cut(s) 285, 331
AoxI GGCC 1 cut(s) 519
ApaLI GTGCAC 1 cut(s) 407
ApeKI GCWGC 7 cut(s) 32, 76, 146, 302, 653, 656, 659
ApoI RAATTY 1 cut(s) 694
AsiGI ACCGGT 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 121, 519
AsuHPI GGTGA 1 cut(s) 467
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 411
BanII GRGCYC 1 cut(s) 400
BauI CACGAG 2 cut(s) 54, 399
Bbv12I GWGCWC 2 cut(s) 55, 411
BbvI GCAGC 7 cut(s) 44, 88, 158, 289, 665, 668, 671
BccI CCATC 2 cut(s) 44, 445
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 2 cut(s) 327, 678
BfmI CTRYAG 1 cut(s) 630
BglI GCCNNNNNGGC 2 cut(s) 216, 395
BisI GCNGC 8 cut(s) 33, 77, 84, 147, 303, 654, 657, 660
BlsI GCNGC 8 cut(s) 34, 78, 85, 148, 304, 655, 658, 661
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 519
BmiI GGNNCC 2 cut(s) 123, 388
BmrI ACTGGG 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 515
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bse118I RCCGGY 2 cut(s) 69, 172
Bse1I ACTGG 2 cut(s) 169, 350
Bse3DI GCAATG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 515
BseGI GGATG 1 cut(s) 601
BseMI GCAATG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 2 cut(s) 169, 350
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 7 cut(s) 44, 88, 158, 289, 665, 668, 671
BshFI GGCC 1 cut(s) 521
BshTI ACCGGT 1 cut(s) 69
BsiHKAI GWGCWC 2 cut(s) 55, 411
BsiSI CCGG 2 cut(s) 70, 173
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 521
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 3 cut(s) 55, 400, 411
Bsp143I GATC 4 cut(s) 42, 277, 323, 547
BspACI CCGC 3 cut(s) 83, 104, 284
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 594
BspHI TCATGA 2 cut(s) 39, 580
BspLI GGNNCC 2 cut(s) 123, 388
BspPI GGATC 2 cut(s) 285, 331
BspQI GCTCTTC 1 cut(s) 124
BspT104I TTCGAA 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 69, 172
BsrI ACTGG 2 cut(s) 169, 350
BssAI RCCGGY 2 cut(s) 69, 172
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 4 cut(s) 42, 277, 323, 547
BssSI CACGAG 2 cut(s) 54, 399
BssT1I CCWWGG 1 cut(s) 515
Bst2BI CACGAG 2 cut(s) 54, 399
Bst4CI ACNGT 2 cut(s) 231, 634
Bst6I CTCTTC 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 81, 174
BstDEI CTNAG 1 cut(s) 602
BstF5I GGATG 1 cut(s) 601
BstKTI GATC 4 cut(s) 45, 280, 326, 550
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 42, 277, 323, 547
BstMWI GCNNNNNNNGC 7 cut(s) 110, 216, 308, 386, 395, 527, 659
BstNSI RCATGY 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 630
BstSLI GKGCMC 1 cut(s) 411
BstV1I GCAGC 7 cut(s) 44, 88, 158, 289, 665, 668, 671
BstX2I RGATCY 2 cut(s) 277, 323
BstYI RGATCY 2 cut(s) 277, 323
BsuRI GGCC 1 cut(s) 521
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 81, 174
CciI TCATGA 2 cut(s) 39, 580
Cfr10I RCCGGY 2 cut(s) 69, 172
Cfr13I GGNCC 2 cut(s) 121, 519
CspAI ACCGGT 1 cut(s) 69
CviAII CATG 9 cut(s) 40, 80, 269, 273, 319, 361, 391, 553, 581
DdeI CTNAG 1 cut(s) 602
DpnI GATC 4 cut(s) 44, 279, 325, 549
DpnII GATC 4 cut(s) 42, 277, 323, 547
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 515
Eco24I GRGCYC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 515
EcoT22I ATGCAT 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 9 cut(s) 43, 83, 272, 276, 322, 364, 394, 556, 584
FatI CATG 9 cut(s) 39, 79, 268, 272, 318, 360, 390, 552, 580
FauNDI CATATG 1 cut(s) 382
Fnu4HI GCNGC 8 cut(s) 33, 77, 84, 147, 303, 654, 657, 660
FokI GGATG 1 cut(s) 608
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 8 cut(s) 33, 77, 84, 147, 303, 654, 657, 660
FspBI CTAG 2 cut(s) 327, 678
GluI GCNGC 8 cut(s) 33, 77, 84, 147, 303, 654, 657, 660
HaeIII GGCC 1 cut(s) 521
HapII CCGG 2 cut(s) 70, 173
Hin1II CATG 9 cut(s) 43, 83, 272, 276, 322, 364, 394, 556, 584
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HinfI GANTC 1 cut(s) 458
HpaII CCGG 2 cut(s) 70, 173
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 3 cut(s) 409, 543, 704
Hpy188I TCNGA 4 cut(s) 47, 195, 235, 603
Hpy188III TCNNGA 3 cut(s) 40, 401, 581
Hpy8I GTNNAC 3 cut(s) 409, 543, 704
HpyAV CCTTC 4 cut(s) 10, 209, 446, 586
HpyCH4III ACNGT 2 cut(s) 231, 634
HpyCH4V TGCA 4 cut(s) 257, 272, 380, 409
HpyF10VI GCNNNNNNNGC 7 cut(s) 110, 216, 308, 386, 395, 527, 659
HpyF3I CTNAG 1 cut(s) 602
Hsp92II CATG 9 cut(s) 43, 83, 272, 276, 322, 364, 394, 556, 584
KroI GCCGGC 1 cut(s) 172
KroNI GCCGGC 1 cut(s) 174
Kzo9I GATC 4 cut(s) 42, 277, 323, 547
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 3 cut(s) 235, 386, 631
Lsp1109I GCAGC 7 cut(s) 44, 88, 158, 289, 665, 668, 671
MaeI CTAG 2 cut(s) 327, 678
MalI GATC 4 cut(s) 44, 279, 325, 549
MboI GATC 4 cut(s) 42, 277, 323, 547
MboII GAAGA 4 cut(s) 141, 272, 490, 695
MflI RGATCY 2 cut(s) 277, 323
MhlI GDGCHC 3 cut(s) 55, 400, 411
MluCI AATT 2 cut(s) 491, 694
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 2 cut(s) 213, 464
MnlI CCTC 5 cut(s) 41, 387, 397, 437, 577
Mph1103I ATGCAT 1 cut(s) 274
MroNI GCCGGC 1 cut(s) 172
MseI TTAA 2 cut(s) 432, 468
MslI CAYNNNNRTG 1 cut(s) 579
MspI CCGG 2 cut(s) 70, 173
Mva1269I GAATGC 1 cut(s) 176
MwoI GCNNNNNNNGC 7 cut(s) 110, 216, 308, 386, 395, 527, 659
NaeI GCCGGC 1 cut(s) 174
NdeI CATATG 1 cut(s) 382
NdeII GATC 4 cut(s) 42, 277, 323, 547
NgoMIV GCCGGC 1 cut(s) 172
NlaIII CATG 9 cut(s) 43, 83, 272, 276, 322, 364, 394, 556, 584
NlaIV GGNNCC 2 cut(s) 123, 388
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 1 cut(s) 83
NspV TTCGAA 1 cut(s) 180
PaeI GCATGC 1 cut(s) 83
PagI TCATGA 2 cut(s) 39, 580
PciSI GCTCTTC 1 cut(s) 124
PctI GAATGC 1 cut(s) 176
PdiI GCCGGC 1 cut(s) 174
PinAI ACCGGT 1 cut(s) 69
PkrI GCNGC 8 cut(s) 34, 78, 85, 148, 304, 655, 658, 661
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PspN4I GGNNCC 2 cut(s) 123, 388
PspPI GGNCC 2 cut(s) 121, 519
PsuI RGATCY 2 cut(s) 277, 323
RseI CAYNNNNRTG 1 cut(s) 579
SapI GCTCTTC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 432, 468
SatI GCNGC 8 cut(s) 33, 77, 84, 147, 303, 654, 657, 660
Sau3AI GATC 4 cut(s) 42, 277, 323, 547
Sau96I GGNCC 2 cut(s) 121, 519
SchI GAGTC 1 cut(s) 467
SduI GDGCHC 3 cut(s) 55, 400, 411
SetI ASST 8 cut(s) 52, 136, 141, 151, 408, 438, 532, 664
SfcI CTRYAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 579
SphI GCATGC 1 cut(s) 83
Sse9I AATT 2 cut(s) 491, 694
SsiI CCGC 3 cut(s) 83, 104, 284
SspMI CTAG 2 cut(s) 327, 678
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 2 cut(s) 231, 634
TaqI TCGA 2 cut(s) 180, 343
TasI AATT 2 cut(s) 491, 694
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 432, 468
Tru9I TTAA 2 cut(s) 432, 468
TscAI CASTG 1 cut(s) 357
TseI GCWGC 7 cut(s) 32, 76, 146, 302, 653, 656, 659
TspDTI ATGAA 6 cut(s) 215, 307, 349, 387, 569, 654
TspRI CASTG 1 cut(s) 357
VneI GTGCAC 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 694
XceI RCATGY 1 cut(s) 83
XspI CTAG 2 cut(s) 327, 678
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.