RLG00000001441

Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0020356
Physical Location & Seq
Reverse (-)
15661821 .. 15663043
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001441

Sequence Viewer

Length: 561 bp
ATGATCGGAGGTGCTCGTGTTCGGCTGAACCAGTGGCAACAGGCGGCTGTGGCAGTTGGGTCGGCAGTGGGGGCATTGCTGGACCCAAGAAGAGCTGACCTGATAGCAGCTTTGGGGGAGACAACCGGGAAGCTGGCATTCGAAAGAGTTGTTCAGAGAATGAAGAGTAGCCCTGAAGGCAGAACTAATGGACATCCTTCTTTACATGCCATACTGTTGGAGCAACCTCGTGTAATATCTGCAAATGTGGGTCATGCATGGGATCTTCCGCCGAATACATTTGGTGCTGCCTATGCGAAGTTCATGGGATCTAGGAATTTCTTTCCAGATAATCGACCACCAATGCGTTTCGTGGAAACAGATGAACTTGCATATGTATCCATGAGGGCTCGTGAGGTGCACGACTTCTGGCACACCCTCTTTGAGCTTCCAACAAACTTGATGGGTGAGTCAGCACTCAAAGTAATAGAGTTTCAGCAAATGTACCTTCCCATGTGCTTGATGTCCGTTATAGGGGGCTCTGTGAGGTTCAATGAGAAGCAAAGAAAATTGTTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coq4

Protein Analysis

187

Amino Acids

20.86

Weight (kDa)

9.51

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coq4 PF05019 6 - 186 3.7e-58 Coenzyme Q (ubiquinone) biosynthesis protein Coq4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020356)

Species Orthologous Gene IDs
malus_domestica MD13G1061300.v1.1
rosa_chinensis RchiOBHm_Chr7g0182561
rosa_laevigata RLG00000001441 RLG00000001445
rosa_multiflora Rmu_sc0005811.1_g000004
rosa_samantha Rh7AG051900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 269
AclWI GGATC 2 cut(s) 270, 316
AcsI RAATTY 1 cut(s) 316
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 1 cut(s) 513
AgsI TTSAA 1 cut(s) 532
AluBI AGCT 4 cut(s) 95, 110, 133, 427
AluI AGCT 4 cut(s) 95, 110, 133, 427
Alw21I GWGCWC 2 cut(s) 16, 402
Alw26I GTCTC 1 cut(s) 113
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 2 cut(s) 270, 316
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 107, 287
ApoI RAATTY 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 458
AsuII TTCGAA 1 cut(s) 141
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 402
BanII GRGCYC 2 cut(s) 391, 521
BauI CACGAG 3 cut(s) 15, 228, 390
Bbv12I GWGCWC 2 cut(s) 16, 402
BbvI GCAGC 2 cut(s) 119, 274
BccI CCATC 1 cut(s) 436
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BciVI GTATCC 1 cut(s) 388
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 2 cut(s) 312, 559
BfuI GTATCC 1 cut(s) 388
BglI GCCNNNNNGGC 1 cut(s) 177
BisI GCNGC 3 cut(s) 45, 108, 288
BlsI GCNGC 3 cut(s) 46, 109, 289
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 74
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 513
BseMI GCAATG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 2 cut(s) 119, 274
BsiHKAI GWGCWC 2 cut(s) 16, 402
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 513
BsmAI GTCTC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 4 cut(s) 16, 391, 402, 521
Bsp143I GATC 3 cut(s) 3, 262, 308
BspACI CCGC 2 cut(s) 44, 269
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 2 cut(s) 270, 316
BspQI GCTCTTC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 74
BsrI ACTGG 1 cut(s) 31
BssMI GATC 3 cut(s) 3, 262, 308
BssSI CACGAG 3 cut(s) 15, 228, 390
Bst2BI CACGAG 3 cut(s) 15, 228, 390
Bst4CI ACNGT 1 cut(s) 216
Bst6I CTCTTC 2 cut(s) 85, 158
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 135
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 3 cut(s) 6, 265, 311
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 3, 262, 308
BstMWI GCNNNNNNNGC 4 cut(s) 50, 71, 177, 293
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 125
BstSLI GKGCMC 1 cut(s) 402
BstV1I GCAGC 2 cut(s) 119, 274
BstX2I RGATCY 2 cut(s) 262, 308
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 2 cut(s) 262, 308
BsuI GTATCC 1 cut(s) 388
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 38, 72
Cac8I GCNNGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 484
CviAII CATG 6 cut(s) 206, 254, 258, 304, 382, 493
CviJI RGCY 9 cut(s) 25, 47, 95, 110, 133, 171, 389, 427, 519
CviKI_1 RGCY 9 cut(s) 25, 47, 95, 110, 133, 171, 389, 427, 519
CviQI GTAC 1 cut(s) 484
DpnI GATC 3 cut(s) 5, 264, 310
DpnII GATC 3 cut(s) 3, 262, 308
Eam1104I CTCTTC 2 cut(s) 85, 158
EarI CTCTTC 2 cut(s) 85, 158
EciI GGCGGA 1 cut(s) 258
Eco24I GRGCYC 2 cut(s) 391, 521
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 2 cut(s) 391, 521
FaeI CATG 6 cut(s) 209, 257, 261, 307, 385, 496
FatI CATG 6 cut(s) 205, 253, 257, 303, 381, 492
FauNDI CATATG 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 45, 108, 288
FokI GGATG 1 cut(s) 180
FriOI GRGCYC 2 cut(s) 391, 521
Fsp4HI GCNGC 3 cut(s) 45, 108, 288
FspBI CTAG 2 cut(s) 312, 559
GluI GCNGC 3 cut(s) 45, 108, 288
HapII CCGG 1 cut(s) 126
Hin1II CATG 6 cut(s) 209, 257, 261, 307, 385, 496
HinfI GANTC 1 cut(s) 449
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 2 cut(s) 8, 156
Hpy188III TCNNGA 2 cut(s) 326, 392
Hpy8I GTNNAC 1 cut(s) 400
HpyAV CCTTC 3 cut(s) 170, 207, 497
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 4 cut(s) 242, 257, 371, 400
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 71, 177, 293
Hsp92II CATG 6 cut(s) 209, 257, 261, 307, 385, 496
Kzo9I GATC 3 cut(s) 3, 262, 308
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 9 cut(s) 26, 44, 65, 113, 119, 139, 186, 339, 394
Lsp1109I GCAGC 2 cut(s) 119, 274
MaeI CTAG 2 cut(s) 312, 559
MalI GATC 3 cut(s) 5, 264, 310
MboI GATC 3 cut(s) 3, 262, 308
MboII GAAGA 4 cut(s) 102, 175, 257, 547
MflI RGATCY 2 cut(s) 262, 308
MhlI GDGCHC 4 cut(s) 16, 391, 402, 521
MluCI AATT 2 cut(s) 316, 548
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 2 cut(s) 198, 455
MnlI CCTC 5 cut(s) 237, 378, 388, 428, 519
Mph1103I ATGCAT 1 cut(s) 259
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 137
MwoI GCNNNNNNNGC 4 cut(s) 50, 71, 177, 293
NciI CCSGG 1 cut(s) 127
NdeI CATATG 1 cut(s) 373
NdeII GATC 3 cut(s) 3, 262, 308
NlaIII CATG 6 cut(s) 209, 257, 261, 307, 385, 496
NlaIV GGNNCC 1 cut(s) 84
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 1 cut(s) 209
NspV TTCGAA 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 85
PctI GAATGC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 46, 109, 289
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 2 cut(s) 262, 308
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
SapI GCTCTTC 1 cut(s) 85
SatI GCNGC 3 cut(s) 45, 108, 288
Sau3AI GATC 3 cut(s) 3, 262, 308
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 4 cut(s) 16, 391, 402, 521
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 1 cut(s) 82
Sse9I AATT 2 cut(s) 316, 548
SsiI CCGC 2 cut(s) 44, 269
SspMI CTAG 2 cut(s) 312, 559
StyD4I CCNGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 141, 334
TasI AATT 2 cut(s) 316, 548
TauI GCSGC 1 cut(s) 47
TscAI CASTG 2 cut(s) 38, 72
TseI GCWGC 2 cut(s) 107, 287
TspDTI ATGAA 3 cut(s) 176, 292, 378
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 2 cut(s) 38, 72
VneI GTGCAC 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 1 cut(s) 316
XceI RCATGY 1 cut(s) 209
XspI CTAG 2 cut(s) 312, 559
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.