RchiOBHm_Chr7g0195741

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0022332
Physical Location & Seq
Forward (+)
13545699 .. 13546914
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
ATGGGGCAGGCTTTCTGGACCATATTCTGTACTAGTTCAGAGTGTTCAAATGAATCTGGAAATGAATGCAGTTCTAGCATTCTAGCCATTATCAATCCAAATTCATGTATCAACAATATTGTCGTCATTGCAGTTGATATTTTGGTCCTACTCATCTTGTTATGTTTCCTTATGTATAGATTAGCATCAAAGAAGATTATAGCACCATCACAGCCTCACACCTTCTCTCCAGTATCAGTTGTGTCAGTCAGTTTCAATGCTGGTTTGGCTTTGGCCTACTTGGGGTCTGGGATATGGACAATCATTGAGAAAGTGAATACAGATCACATGGTTTTACCTCTACATGGATGGCTAGTATATTTTTTTCAAGGGTTTACATGGTTGGGCCTAGGTTTTACCATAAACCTCTCAAAACCACACCTTCCGCATAATGCAATAATGAAATTCTTTTCAATTTTTGGTTTCTTAATTGCAGTTTTTCTTTGTGGTTCATCAATTTGGGAATCTATTCTGGATGAGGCCTTATCAGATCTGATTAACCAAATATCACAGGTGATATCAGTCCAAATGACACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

192

Amino Acids

21.12

Weight (kDa)

5.6

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 4 - 176 1.6e-60 ABCC10 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022332)

Species Orthologous Gene IDs
malus_domestica MD14G1118800.v1.1
rosa_chinensis RchiOBHm_Chr7g0195741
rosa_samantha Rh4BG127300 Rh7CG159200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 425
AcsI RAATTY 2 cut(s) 100, 443
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 2 cut(s) 282, 344
AgsI TTSAA 4 cut(s) 48, 256, 368, 453
AhlI ACTAGT 1 cut(s) 32
AoxI GGCC 3 cut(s) 273, 385, 519
ApoI RAATTY 2 cut(s) 100, 443
Asp700I GAANNNNTTC 1 cut(s) 507
AspA2I CCTAGG 1 cut(s) 388
AspS9I GGNCC 3 cut(s) 18, 145, 385
AsuHPI GGTGA 1 cut(s) 565
AvaII GGWCC 2 cut(s) 18, 145
AvrII CCTAGG 1 cut(s) 388
BccI CCATC 2 cut(s) 214, 342
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 5 cut(s) 33, 75, 83, 353, 389
BglII AGATCT 1 cut(s) 529
BlnI CCTAGG 1 cut(s) 388
Bme18I GGWCC 2 cut(s) 18, 145
BmgT120I GGNCC 3 cut(s) 18, 145, 385
BmsI GCATC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 388
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 344
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 2 cut(s) 353, 520
BseJI GATNNNNATC 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 282, 344
BseMI GCAATG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 230
BshFI GGCC 3 cut(s) 275, 387, 521
BslI CCNNNNNNNGG 2 cut(s) 282, 344
BsmI GAATGC 2 cut(s) 71, 78
BsnI GGCC 3 cut(s) 275, 387, 521
Bsp143I GATC 2 cut(s) 322, 529
BspACI CCGC 1 cut(s) 425
BspANI GGCC 3 cut(s) 275, 387, 521
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 2 cut(s) 322, 529
BssT1I CCWWGG 1 cut(s) 388
Bst4CI ACNGT 1 cut(s) 576
BstC8I GCNNGC 1 cut(s) 9
BstF5I GGATG 2 cut(s) 353, 520
BstKTI GATC 2 cut(s) 325, 532
BstMBI GATC 2 cut(s) 322, 529
BstMWI GCNNNNNNNGC 2 cut(s) 75, 266
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 3 cut(s) 275, 387, 521
BtsCI GGATG 2 cut(s) 353, 520
BtsIMutI CAGTG 1 cut(s) 572
Cac8I GCNNGC 1 cut(s) 9
Cfr13I GGNCC 3 cut(s) 18, 145, 385
Csp6I GTAC 1 cut(s) 30
CviAII CATG 4 cut(s) 105, 328, 344, 378
CviJI RGCY 8 cut(s) 11, 86, 214, 269, 275, 352, 387, 521
CviKI_1 RGCY 8 cut(s) 11, 86, 214, 269, 275, 352, 387, 521
CviQI GTAC 1 cut(s) 30
DpnI GATC 2 cut(s) 324, 531
DpnII GATC 2 cut(s) 322, 529
Eco130I CCWWGG 1 cut(s) 388
Eco147I AGGCCT 1 cut(s) 521
Eco32I GATATC 1 cut(s) 558
Eco47I GGWCC 2 cut(s) 18, 145
EcoRV GATATC 1 cut(s) 558
EcoT14I CCWWGG 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 4 cut(s) 108, 331, 347, 381
FatI CATG 4 cut(s) 104, 327, 343, 377
FokI GGATG 2 cut(s) 360, 527
FspBI CTAG 5 cut(s) 33, 75, 83, 353, 389
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 3 cut(s) 275, 387, 521
Hin1II CATG 4 cut(s) 108, 331, 347, 381
HinfI GANTC 2 cut(s) 53, 503
HphI GGTGA 1 cut(s) 565
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 3 cut(s) 40, 529, 534
Hpy188III TCNNGA 3 cut(s) 16, 57, 512
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 2 cut(s) 232, 431
HpyCH4III ACNGT 1 cut(s) 576
HpyCH4V TGCA 4 cut(s) 69, 131, 434, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 266
Hsp92II CATG 4 cut(s) 108, 331, 347, 381
Kzo9I GATC 2 cut(s) 322, 529
LpnPI CCDG 6 cut(s) 42, 243, 246, 273, 497, 536
LweI GCATC 1 cut(s) 194
MaeI CTAG 5 cut(s) 33, 75, 83, 353, 389
MalI GATC 2 cut(s) 324, 531
MboI GATC 2 cut(s) 322, 529
MboII GAAGA 1 cut(s) 205
MflI RGATCY 1 cut(s) 529
MluCI AATT 5 cut(s) 100, 443, 453, 468, 495
MnlI CCTC 4 cut(s) 225, 348, 416, 511
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 2 cut(s) 467, 537
Mva1269I GAATGC 2 cut(s) 71, 78
MwoI GCNNNNNNNGC 2 cut(s) 75, 266
NdeII GATC 2 cut(s) 322, 529
NlaIII CATG 4 cut(s) 108, 331, 347, 381
PceI AGGCCT 1 cut(s) 521
PctI GAATGC 2 cut(s) 71, 78
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 2 cut(s) 53, 503
PspPI GGNCC 3 cut(s) 18, 145, 385
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 467, 537
Sau3AI GATC 2 cut(s) 322, 529
Sau96I GGNCC 3 cut(s) 18, 145, 385
SetI ASST 6 cut(s) 224, 340, 394, 408, 423, 555
SfaNI GCATC 1 cut(s) 194
SinI GGWCC 2 cut(s) 18, 145
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 5 cut(s) 100, 443, 453, 468, 495
SseBI AGGCCT 1 cut(s) 521
SsiI CCGC 1 cut(s) 425
SspI AATATT 1 cut(s) 118
SspMI CTAG 5 cut(s) 33, 75, 83, 353, 389
StuI AGGCCT 1 cut(s) 521
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 1 cut(s) 576
TasI AATT 5 cut(s) 100, 443, 453, 468, 495
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 2 cut(s) 53, 503
Tru1I TTAA 2 cut(s) 467, 537
Tru9I TTAA 2 cut(s) 467, 537
TscAI CASTG 1 cut(s) 579
TspDTI ATGAA 5 cut(s) 66, 78, 93, 455, 480
TspRI CASTG 1 cut(s) 579
VpaK11BI GGWCC 2 cut(s) 18, 145
XapI RAATTY 2 cut(s) 100, 443
XmaJI CCTAGG 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 5 cut(s) 33, 75, 83, 353, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.