Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016327

Physical Location & Seq

Genomic Coordinates Reverse (-)

14336180 .. 14336830

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTGAGAAAGACAAGCAGGCCTACGCATTGGCGAATGGCTACACCAGATCAAATGATCACGAATCGGCCGAAGCCACCTTCCAATACGAGGAGGAGCTGAAACGCCAGAAGAGAAGGAAGTTGTTTATGTATATTATTGGTACTTTTTTCGTCTTTCAAATCATAGTCATAACCTTATTCGCTCTCACTGTCATGAAAGTTAAGACCCCTGGGCTCAAGTTGGGTAATATCGATGTCCAAAACCTCAATTTCACCTCTCAAACACCACCTTCTTTCGAAATGACCTTCACAACCCAGATTAGAATCAAGAACGCAAATTTTGGTCCCTACAAATATGACAGTAGCTATGTCACGTTTTTGTACCAGGGGATGACATTAGTGCAGGTTACAATTCCTAAGGGAAAGGCTGGGGGGCGTTTGACAACAAAAATTGGAGCCACCGTGATTCTGAATTCCAAGGCATTGCCAAGAGTCTCAAATCTTGGTAGTGATTTGGATTCCGGGGTATTGAAGCTTAGCAGCCAAGCAAAGATTAGCGGGAAAGTTGTATTGATGTTCGTGATGAAGAAGAAAAAATCTGCAGAGATGAATTGTACCATTGAAGTTAATTTGGCAACCAAGAGGGTTCAGGCATTGGAATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

216

Amino Acids

24.18

Weight (kDa)

9.81

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03420
rosa_chinensis	RchiOBHm_Chr7g0196281 RchiOBHm_Chr7g0196371
rosa_laevigata	RLG00000004031 RLG00000004045
rosa_multiflora	Rmu_co8390119.1_g000001 Rmu_sc0005993.1_g000010 Rmu_sc0007292.1_g000031
rosa_roxburghii	Rroxscaffold_3G00259490 Rroxscaffold_3G00259570
rosa_rugosa	Rorug07G0032300 Rorug07G0033100
rosa_samantha	Rh7CG163900
rosa_wichuraiana	Rw7G013620 Rw7G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AciI	CCGC	1 cut(s)	540
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	319, 454
AfaI	GTAC	3 cut(s)	145, 365, 598
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	161, 514, 605
AjnI	CCWGG	2 cut(s)	211, 366
AluBI	AGCT	3 cut(s)	100, 348, 517
AluI	AGCT	3 cut(s)	100, 348, 517
Alw26I	GTCTC	1 cut(s)	481
AoxI	GGCC	2 cut(s)	21, 69
ApeKI	GCWGC	1 cut(s)	522
ApoI	RAATTY	2 cut(s)	319, 454
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	247
AsuII	TTCGAA	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	326
AxyI	CCTNAGG	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	534
BciT130I	CCWGG	2 cut(s)	213, 368
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	481
BfmI	CTRYAG	1 cut(s)	582
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	1 cut(s)	523
BlpI	GCTNAGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	524
Bme1390I	CCNGG	3 cut(s)	213, 368, 505
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	2 cut(s)	328, 439
BmrFI	CCNGG	3 cut(s)	213, 368, 505
Bpu1102I	GCTNAGC	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	505
Bsa29I	ATCGAT	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	305
BsaJI	CCNNGG	5 cut(s)	211, 212, 367, 459, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	464
Bse8I	GATNNNNATC	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	213, 368
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	5 cut(s)	211, 212, 367, 459, 504
BseGI	GGATG	1 cut(s)	378
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	464
BseRI	GAGGAG	2 cut(s)	107, 110
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	534
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	404
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	23, 71
BshVI	ATCGAT	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	504
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	2 cut(s)	23, 71
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	50, 58
Bsp1720I	GCTNAGC	1 cut(s)	518
BspACI	CCGC	1 cut(s)	540
BspANI	GGCC	2 cut(s)	23, 71
BspDI	ATCGAT	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	328, 439
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	376
BspT104I	TTCGAA	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	464
BssECI	CCNNGG	5 cut(s)	211, 212, 367, 459, 504
BssMI	GATC	2 cut(s)	50, 58
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	213, 368
Bst4CI	ACNGT	3 cut(s)	193, 344, 445
Bst6I	CTCTTC	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	3 cut(s)	6, 399, 518
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	2 cut(s)	53, 61
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	2 cut(s)	50, 58
BstMCI	CGRYCG	1 cut(s)	72
BstNI	CCWGG	2 cut(s)	213, 368
BstSCI	CCNGG	3 cut(s)	211, 366, 503
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	534
BstZI	CGGCCG	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	234
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	23, 71
BsuTUI	ATCGAT	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	326
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	144, 364, 597
CviAII	CATG	1 cut(s)	196
CviQI	GTAC	3 cut(s)	144, 364, 597
DdeI	CTNAG	3 cut(s)	6, 399, 518
DpnI	GATC	2 cut(s)	52, 60
DpnII	GATC	2 cut(s)	50, 58
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	459
Eco147I	AGGCCT	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	326
Eco52I	CGGCCG	1 cut(s)	69
Eco81I	CCTNAGG	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	211, 366
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	1 cut(s)	199
FaiI	YATR	7 cut(s)	131, 135, 167, 173, 197, 339, 351
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	533
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	523
GluI	GCNGC	1 cut(s)	523
GsaI	CCCAGC	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	23, 71
HapII	CCGG	1 cut(s)	504
Hin1II	CATG	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	5 cut(s)	65, 306, 448, 474, 500
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	4 cut(s)	62, 196, 310, 562
HpyAV	CCTTC	4 cut(s)	91, 111, 282, 298
HpyCH4III	ACNGT	3 cut(s)	193, 344, 445
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	3 cut(s)	385, 584, 645
HpyF3I	CTNAG	3 cut(s)	6, 399, 518
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	50, 58
LmnI	GCTCC	2 cut(s)	97, 437
Lsp1109I	GCAGC	1 cut(s)	534
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	352, 388
MalI	GATC	2 cut(s)	52, 60
MboI	GATC	2 cut(s)	50, 58
MboII	GAAGA	3 cut(s)	124, 580, 583
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	7 cut(s)	250, 319, 393, 432, 454, 592, 610
MlyI	GAGTC	1 cut(s)	483
MnlI	CCTC	5 cut(s)	85, 88, 257, 268, 618
MseI	TTAA	2 cut(s)	204, 609
MslI	CAYNNNNRTG	2 cut(s)	194, 640
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	3 cut(s)	213, 368, 505
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	2 cut(s)	213, 368
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	2 cut(s)	50, 58
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	328, 439
NmuCI	GTSAC	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	279
PagI	TCATGA	1 cut(s)	195
PasI	CCCWGGG	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	4 cut(s)	65, 306, 448, 500
PkrI	GCNGC	1 cut(s)	524
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	211, 366
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	211, 366
PspN4I	GGNNCC	2 cut(s)	328, 439
PspPI	GGNCC	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	586
RsaI	GTAC	3 cut(s)	145, 365, 598
RsaNI	GTAC	3 cut(s)	144, 364, 597
RseI	CAYNNNNRTG	2 cut(s)	194, 640
SaqAI	TTAA	2 cut(s)	204, 609
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	2 cut(s)	50, 58
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	3 cut(s)	213, 368, 505
SduI	GDGCHC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	582
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	2 cut(s)	194, 640
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	7 cut(s)	250, 319, 393, 432, 454, 592, 610
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	540
StuI	AGGCCT	1 cut(s)	23
StyD4I	CCNGG	3 cut(s)	211, 366, 503
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	193, 344, 445
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	234, 279
TasI	AATT	7 cut(s)	250, 319, 393, 432, 454, 592, 610
TfiI	GAWTC	4 cut(s)	65, 306, 448, 500
Tru1I	TTAA	2 cut(s)	204, 609
Tru9I	TTAA	2 cut(s)	204, 609
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	522
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	3 cut(s)	212, 581, 605
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	2 cut(s)	319, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.