RchiOBHm_Chr7g0196371

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016327
Physical Location & Seq
Reverse (-)
14336180 .. 14336830
651 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17564

Sequence Viewer

Length: 651 bp
ATGGCTGAGAAAGACAAGCAGGCCTACGCATTGGCGAATGGCTACACCAGATCAAATGATCACGAATCGGCCGAAGCCACCTTCCAATACGAGGAGGAGCTGAAACGCCAGAAGAGAAGGAAGTTGTTTATGTATATTATTGGTACTTTTTTCGTCTTTCAAATCATAGTCATAACCTTATTCGCTCTCACTGTCATGAAAGTTAAGACCCCTGGGCTCAAGTTGGGTAATATCGATGTCCAAAACCTCAATTTCACCTCTCAAACACCACCTTCTTTCGAAATGACCTTCACAACCCAGATTAGAATCAAGAACGCAAATTTTGGTCCCTACAAATATGACAGTAGCTATGTCACGTTTTTGTACCAGGGGATGACATTAGTGCAGGTTACAATTCCTAAGGGAAAGGCTGGGGGGCGTTTGACAACAAAAATTGGAGCCACCGTGATTCTGAATTCCAAGGCATTGCCAAGAGTCTCAAATCTTGGTAGTGATTTGGATTCCGGGGTATTGAAGCTTAGCAGCCAAGCAAAGATTAGCGGGAAAGTTGTATTGATGTTCGTGATGAAGAAGAAAAAATCTGCAGAGATGAATTGTACCATTGAAGTTAATTTGGCAACCAAGAGGGTTCAGGCATTGGAATGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

216

Amino Acids

24.18

Weight (kDa)

9.81

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AciI CCGC 1 cut(s) 540
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 319, 454
AfaI GTAC 3 cut(s) 145, 365, 598
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 3 cut(s) 161, 514, 605
AjnI CCWGG 2 cut(s) 211, 366
AluBI AGCT 3 cut(s) 100, 348, 517
AluI AGCT 3 cut(s) 100, 348, 517
Alw26I GTCTC 1 cut(s) 481
AoxI GGCC 2 cut(s) 21, 69
ApeKI GCWGC 1 cut(s) 522
ApoI RAATTY 2 cut(s) 319, 454
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 247
AsuII TTCGAA 1 cut(s) 279
AvaII GGWCC 1 cut(s) 326
AxyI CCTNAGG 1 cut(s) 399
BanII GRGCYC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 534
BciT130I CCWGG 2 cut(s) 213, 368
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 481
BfmI CTRYAG 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 1 cut(s) 523
BlpI GCTNAGC 1 cut(s) 518
BlsI GCNGC 1 cut(s) 524
Bme1390I CCNGG 3 cut(s) 213, 368, 505
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 328, 439
BmrFI CCNGG 3 cut(s) 213, 368, 505
Bpu1102I GCTNAGC 1 cut(s) 518
Bpu14I TTCGAA 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 505
Bsa29I ATCGAT 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 305
BsaJI CCNNGG 5 cut(s) 211, 212, 367, 459, 504
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse21I CCTNAGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 464
Bse8I GATNNNNATC 1 cut(s) 305
BseBI CCWGG 2 cut(s) 213, 368
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 5 cut(s) 211, 212, 367, 459, 504
BseGI GGATG 1 cut(s) 378
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 464
BseRI GAGGAG 2 cut(s) 107, 110
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 534
BseYI CCCAGC 1 cut(s) 410
BsgI GTGCAG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 23, 71
BshVI ATCGAT 1 cut(s) 234
BsiEI CGRYCG 1 cut(s) 72
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 481
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 647
BsnI GGCC 2 cut(s) 23, 71
Bsp119I TTCGAA 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 50, 58
Bsp1720I GCTNAGC 1 cut(s) 518
BspACI CCGC 1 cut(s) 540
BspANI GGCC 2 cut(s) 23, 71
BspDI ATCGAT 1 cut(s) 234
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 328, 439
BspMAI CTGCAG 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 376
BspT104I TTCGAA 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 464
BssECI CCNNGG 5 cut(s) 211, 212, 367, 459, 504
BssMI GATC 2 cut(s) 50, 58
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 213, 368
Bst4CI ACNGT 3 cut(s) 193, 344, 445
Bst6I CTCTTC 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 3 cut(s) 6, 399, 518
BstF5I GGATG 1 cut(s) 378
BstKTI GATC 2 cut(s) 53, 61
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 2 cut(s) 50, 58
BstMCI CGRYCG 1 cut(s) 72
BstNI CCWGG 2 cut(s) 213, 368
BstSCI CCNGG 3 cut(s) 211, 366, 503
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 534
BstZI CGGCCG 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 234
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 2 cut(s) 23, 71
BsuTUI ATCGAT 1 cut(s) 234
BtsCI GGATG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 189
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 3 cut(s) 144, 364, 597
CviAII CATG 1 cut(s) 196
CviQI GTAC 3 cut(s) 144, 364, 597
DdeI CTNAG 3 cut(s) 6, 399, 518
DpnI GATC 2 cut(s) 52, 60
DpnII GATC 2 cut(s) 50, 58
EaeI YGGCCR 1 cut(s) 69
EagI CGGCCG 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
EclXI CGGCCG 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 326
Eco52I CGGCCG 1 cut(s) 69
Eco81I CCTNAGG 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 454
EcoRII CCWGG 2 cut(s) 211, 366
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 1 cut(s) 199
FaiI YATR 7 cut(s) 131, 135, 167, 173, 197, 339, 351
FaqI GGGAC 1 cut(s) 312
FatI CATG 1 cut(s) 195
FauI CCCGC 1 cut(s) 533
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 523
FokI GGATG 1 cut(s) 385
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 523
GluI GCNGC 1 cut(s) 523
GsaI CCCAGC 1 cut(s) 414
HaeIII GGCC 2 cut(s) 23, 71
HapII CCGG 1 cut(s) 504
Hin1II CATG 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 5 cut(s) 65, 306, 448, 474, 500
HpaII CCGG 1 cut(s) 504
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 453
Hpy188III TCNNGA 4 cut(s) 62, 196, 310, 562
HpyAV CCTTC 4 cut(s) 91, 111, 282, 298
HpyCH4III ACNGT 3 cut(s) 193, 344, 445
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 3 cut(s) 385, 584, 645
HpyF3I CTNAG 3 cut(s) 6, 399, 518
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 50, 58
LmnI GCTCC 2 cut(s) 97, 437
Lsp1109I GCAGC 1 cut(s) 534
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 352, 388
MalI GATC 2 cut(s) 52, 60
MboI GATC 2 cut(s) 50, 58
MboII GAAGA 3 cut(s) 124, 580, 583
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 7 cut(s) 250, 319, 393, 432, 454, 592, 610
MlyI GAGTC 1 cut(s) 483
MnlI CCTC 5 cut(s) 85, 88, 257, 268, 618
MseI TTAA 2 cut(s) 204, 609
MslI CAYNNNNRTG 2 cut(s) 194, 640
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 3 cut(s) 213, 368, 505
Mva1269I GAATGC 1 cut(s) 647
MvaI CCWGG 2 cut(s) 213, 368
NciI CCSGG 1 cut(s) 505
NdeII GATC 2 cut(s) 50, 58
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 328, 439
NmuCI GTSAC 1 cut(s) 352
NspV TTCGAA 1 cut(s) 279
PagI TCATGA 1 cut(s) 195
PasI CCCWGGG 1 cut(s) 212
PceI AGGCCT 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 647
PfeI GAWTC 4 cut(s) 65, 306, 448, 500
PkrI GCNGC 1 cut(s) 524
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp6I CCWGG 2 cut(s) 211, 366
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 2 cut(s) 211, 366
PspN4I GGNNCC 2 cut(s) 328, 439
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 1 cut(s) 586
RsaI GTAC 3 cut(s) 145, 365, 598
RsaNI GTAC 3 cut(s) 144, 364, 597
RseI CAYNNNNRTG 2 cut(s) 194, 640
SaqAI TTAA 2 cut(s) 204, 609
SatI GCNGC 1 cut(s) 523
Sau3AI GATC 2 cut(s) 50, 58
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 3 cut(s) 213, 368, 505
SduI GDGCHC 1 cut(s) 219
SfcI CTRYAG 1 cut(s) 582
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 2 cut(s) 194, 640
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 7 cut(s) 250, 319, 393, 432, 454, 592, 610
SseBI AGGCCT 1 cut(s) 23
SsiI CCGC 1 cut(s) 540
StuI AGGCCT 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 211, 366, 503
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 3 cut(s) 193, 344, 445
TaiI ACGT 1 cut(s) 359
TaqI TCGA 2 cut(s) 234, 279
TasI AATT 7 cut(s) 250, 319, 393, 432, 454, 592, 610
TfiI GAWTC 4 cut(s) 65, 306, 448, 500
Tru1I TTAA 2 cut(s) 204, 609
Tru9I TTAA 2 cut(s) 204, 609
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 522
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 212, 581, 605
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 2 cut(s) 319, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.